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BaseInfo

ncRNA ID	zma-miR390a-3p
Species	Zea mays
Class	miRNA
Genome position	chr1:292578889-292579069 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	160 - CGCUAUCUAUCCUGAGCUCCA - 180
Stem-loop(if miRNA)	-- A         G         CUA   AAACAC     U        -   --GC        --A     --        GA      U   G   G AGCUCAGGA GGAUAGCGC   GGA      AUAGA CGGAGCCG GCC    GAGGAGAA   GAAAG  AGCCAAGA  UAUGUG GAU A   | ||||||||| |||||||||   |||      ||||| |||||||| |||    ||||||||   |||||  ||||||||  |||||| ||| A   C UCGAGUCCU UCUAUCGCG   UCU      UAUCU GUCUUGGU CGG    CUCCUCUU   UUUUC  UCGGUUCU  GUACAU CUA U CA C         A         AAG   ---AAC     -        G   AGGU        GUG     GA        AG      -   A
Stem-loop sequence	GAAGCUCAGGAGGGAUAGCGCCUAGGAAAACACAUAGAUCGGAGCCGGCCGCGAGGAGAAAGAAAGAGCCAAGAGAUAUGUGUGAUGAAUAAUCUACAUGGAUCUUGGCUAGCUUUUGUGUUCUCCUCUGGAGGCGUGGUUCUGUCUAUCAAUCUGAAGCGCUAUCUAUCCUGAGCUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163451.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2559767	NA	coding protein	psRNATarget
HI402990.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2074227	NA	coding protein	psRNATarget
JB163733.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235120.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2985353	NA	coding protein	psRNATarget
HI403272.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235402.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2985353	NA	coding protein	psRNATarget
AY111410.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   **||*=||||||||||||||* targets:617   ACGAUUUCAGGAUAGAUAGCU   637 Target Full Sequence	3.0	Zea mays CL56074_1 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).