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BaseInfo

ncRNA ID	zma-miR390a-5p
Species	Zea mays
Class	miRNA
Genome position	chr1:292578889-292579069 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - AAGCUCAGGAGGGAUAGCGCC - 22
Stem-loop(if miRNA)	-- A         G         CUA   AAACAC     U        -   --GC        --A     --        GA      U   G   G AGCUCAGGA GGAUAGCGC   GGA      AUAGA CGGAGCCG GCC    GAGGAGAA   GAAAG  AGCCAAGA  UAUGUG GAU A   | ||||||||| |||||||||   |||      ||||| |||||||| |||    ||||||||   |||||  ||||||||  |||||| ||| A   C UCGAGUCCU UCUAUCGCG   UCU      UAUCU GUCUUGGU CGG    CUCCUCUU   UUUUC  UCGGUUCU  GUACAU CUA U CA C         A         AAG   ---AAC     -        G   AGGU        GUG     GA        AG      -   A
Stem-loop sequence	GAAGCUCAGGAGGGAUAGCGCCUAGGAAAACACAUAGAUCGGAGCCGGCCGCGAGGAGAAAGAAAGAGCCAAGAGAUAUGUGUGAUGAAUAAUCUACAUGGAUCUUGGCUAGCUUUUGUGUUCUCCUCUGGAGGCGUGGUUCUGUCUAUCAAUCUGAAGCGCUAUCUAUCCUGAGCUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402990.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||||||||||||||||||| targets:167   GGCGCUAUCCCUCCUGAGCUU   187 Target Full Sequence	0.0	Sequence 1115 from Patent EP2074227	NA	coding protein	psRNATarget
JB163733.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||||||||||||||||||| targets:167   GGCGCUAUCCCUCCUGAGCUU   187 Target Full Sequence	0.0	Sequence 1397 from Patent EP2559767	NA	coding protein	psRNATarget
HI403272.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||||||||||||||||||| targets:167   GGCGCUAUCCCUCCUGAGCUU   187 Target Full Sequence	0.0	Sequence 1397 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235120.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||||||||||||||||||| targets:167   GGCGCUAUCCCUCCUGAGCUU   187 Target Full Sequence	0.0	Sequence 1115 from Patent EP2985353	NA	coding protein	psRNATarget
JB163451.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||||||||||||||||||| targets:167   GGCGCUAUCCCUCCUGAGCUU   187 Target Full Sequence	0.0	Sequence 1115 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235402.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||||||||||||||||||| targets:167   GGCGCUAUCCCUCCUGAGCUU   187 Target Full Sequence	0.0	Sequence 1397 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548223.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   |||*||||||||||||||||| targets:828   GGCACUAUCCCUCCUGAGCUU   848 Target Full Sequence	1.0	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g63430 (LOC103648480), mRNA	NA	coding protein	psRNATarget
EU946513.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|*||||||||||||||||* targets:576   CCCUCUAUCCCUCCUGAGCUA   596 Target Full Sequence	2.0	Zea mays clone 314632 mRNA sequence	NA	coding protein	psRNATarget
BT069899.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:569   CAUUCUAUCCCUCCUGAGCUA   589 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0320C13 mRNA, complete cds	NA	coding protein	psRNATarget
EU968130.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:616   CCUUCUAUCCCUCCUGAGCUA   636 Target Full Sequence	3.0	Zea mays clone 314906 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU971753.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:671   CCUUCUAUCCCUCCUGAGCUA   691 Target Full Sequence	3.0	Zea mays clone 370076 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU976194.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:721   CCUUCUAUCCCUCCUGAGCUA   741 Target Full Sequence	3.0	Zea mays clone 687444 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU974880.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:588   CCUUCUAUCCCUCCUGAGCUA   608 Target Full Sequence	3.0	Zea mays clone 460383 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY109233.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:700   CCUUCUAUCCCUCCUGAGCUA   720 Target Full Sequence	3.0	Zea mays PCO085991 mRNA sequence	NA	coding protein	psRNATarget
EU957809.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:826   CCUUCUAUCCCUCCUGAGCUA   846 Target Full Sequence	3.0	Zea mays clone 1623934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT084354.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:968   CAUUCUAUCCCUCCUGAGCUA   988 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0104O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174709.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:1091   CAUUCUAUCCCUCCUGAGCUA   1111 Target Full Sequence	3.0	Zea mays uncharacterized LOC100381935 (LOC100381935), mRNA	NA	coding protein	psRNATarget
BT062650.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:1091   CAUUCUAUCCCUCCUGAGCUA   1111 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0328E19 mRNA, complete cds	NA	coding protein	psRNATarget
EU962281.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **=*||||||||||||||||* targets:642   CCUUCUAUCCCUCCUGAGCUA   662 Target Full Sequence	3.0	Zea mays clone 241492 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).