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BaseInfo

ncRNA ID	ath-miRf10286-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - ACUCGACCAGGGGGUCGAGUGU - NA
Stem-loop(if miRNA)	-UG  GG         AUA  A         GA A  GA     ---------      GA  G  UGUCUUGGUGGUACUCGACCAGGGGGUCGAGUGA    AA  UACUCGACC   UG UCGAGUAGA  G UC  GUGAU         GUGGCC  GU AU                                  U    ||  |||||||||   || |||||||||  | ||  |||||         ||||||  || ||    UU  GUGAGCUGG   AC AGCUCAUCU  C AG  UACUG         GGUGAG  CU GG                                  U ACG  UU         GGG  C         AC A  -G     AAGUUGUUU      --  -  GGGACCAGCUCAUCUACCGGAGUAGUGAAGUGUU
Stem-loop sequence	UGAAGGUACUCGACCAUAUGAUCGAGUAGAGAGAUCGAGUGAUGUGGCCGAGUGAUUGUCUUGGUGGUACUCGACCAGGGGGUCGAGUGAUUUUGUGAAGUGAUGAGGCCAUCUACUCGACCAGGGGGUCGAGUGGUUUGUUGAAGUCAUGGAACCAUCUACUCGACCAGGGGGUCGAGUGUUUUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||| targets:90   CCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *=|||||||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *=|||||||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||| targets:124   CCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||| targets:1571   UCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *=|||||||||||||||||||| targets:308   UUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *=||||*||||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *=||||*||||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *=||*||||||||||||||||| targets:583   UUACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||*|||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||*|||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *=|||||||||||*|||||||| targets:187   CUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *|||||||||||*||||||||| targets:489   CCACUCGACCCCGUGGUCGAGU   510 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *|||||||||||*||||||||| targets:535   CCACUCGACCCCAUGGUCGAGU   556 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||*|||||||| targets:1104   CCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   *|||||||||||*||||||||| targets:1209   CCACUCGACCCCGUGGUCGAGU   1230 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:22   UGUGAGCUGGGGGACCAGCUCA   1   |=|||=||||||||||||*||| targets:142   AUACUUGACCCCCUGGUCUAGU   163 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget