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BaseInfo

ncRNA ID zma-miR171i-5p
Species Zea mays
Class miRNA
Genome position chr1:273293188-273293291 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 23 - UGUUGGCACGGUUCAAUCAAA - 43
Stem-loop(if miRNA) CUGGUU    -     -AG  C                      ---A   -  G
      GGCU GAGAG   UG GAUGUUGGCACGGUUCAAUCAA    UCG CC G
      |||| |||||   || ||||||||||||||||||||||    ||| || C
      CCGA CUCUU   AC CUAUAACCGUGCCGAGUUAGUU    AGU GG C
---GAU    U     CCA  A                      GUUC   U  G
Stem-loop sequence CUGGUUGGCUGAGAGAGUGCGAUGUUGGCACGGUUCAAUCAAAUCGCCGGCCGGGUUGACUUGUUGAUUGAGCCGUGCCAAUAUCACAACCUUCUCUAGCCUAG

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).