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BaseInfo

ncRNA ID	zma-miR159e-3p
Species	Zea mays
Class	miRNA
Genome position	chr1:246032144-246032270 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - AUUGGUUUGAAGGGAGCUCCA - 22
Stem-loop(if miRNA)	-- C       -G   C   U  UCGA    C    C  U   A     -    -A  GCAAGUCCG   G AGCUCCU  CAG AUC GU    GGCU GCCG GU CUG UGAUC CGGC  GC         G   | |||||||  ||| ||| ||    |||| |||| || ||| ||||| ||||  ||   C UCGAGGG  GUU UGG UA    CCGG CGGC CG GGC GCUGG GCCG  GG         C CA C       AA   -   U  --UG    U    -  C   G     A    GC  CGGCAGCGG
Stem-loop sequence	GCAGCUCCUGCAGCAUCUGUUCGAGGCUCGCCGCGUUCUGAUGAUCCGGCAGCGCAAGUCCGGCGGCGACGGCGGCGGCCGAGGUCGGCGGCGCCGGCUGGCCGUAUUGGUUUGAAGGGAGCUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KJ727532.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   ||||||||||||||||||||| targets:869   UGGAGCUCCCUUCAAACCAAU   889 Target Full Sequence	0.0	Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001148578.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   ||||||||||||||||||||| targets:1044   UGGAGCUCCCUUCAAACCAAU   1064 Target Full Sequence	0.0	Zea mays putative MYB DNA-binding domain superfamily protein (MYB129), mRNA	NA	coding protein	psRNATarget
BT042537.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   ||||||||||||||||||||| targets:1044   UGGAGCUCCCUUCAAACCAAU   1064 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666784.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   ||||||||||||||||||||| targets:1403   UGGAGCUCCCUUCAAACCAAU   1423 Target Full Sequence	0.0	PREDICTED: Zea mays protein rough sheath 2-like (LOC103643621), mRNA	NA	coding protein	psRNATarget
XM_008683317.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   ||||||||||||||||||||| targets:1472   UGGAGCUCCCUUCAAACCAAU   1492 Target Full Sequence	0.0	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYB129), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403126.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *||*||||||||||||||||| targets:11   CGGUGCUCCCUUCAAACCAAU   31 Target Full Sequence	1.0	Sequence 1251 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235256.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *||*||||||||||||||||| targets:11   CGGUGCUCCCUUCAAACCAAU   31 Target Full Sequence	1.0	Sequence 1251 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235562.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *||*||||||||||||||||| targets:11   CGGUGCUCCCUUCAAACCAAU   31 Target Full Sequence	1.0	Sequence 1557 from Patent EP2985353	NA	coding protein	psRNATarget
JB163587.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *||*||||||||||||||||| targets:11   CGGUGCUCCCUUCAAACCAAU   31 Target Full Sequence	1.0	Sequence 1251 from Patent EP2559767	NA	coding protein	psRNATarget
HI403432.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *||*||||||||||||||||| targets:11   CGGUGCUCCCUUCAAACCAAU   31 Target Full Sequence	1.0	Sequence 1557 from Patent EP2074227	NA	coding protein	psRNATarget
JB163893.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *||*||||||||||||||||| targets:11   CGGUGCUCCCUUCAAACCAAU   31 Target Full Sequence	1.0	Sequence 1557 from Patent EP2559767	NA	coding protein	psRNATarget
KY110964.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:488   CGGAGCCCCCUUCAAACCAAA   508 Target Full Sequence	2.0	Zea mays SPOROCYTELESS-like EAR-containing protein 2 mRNA, complete cds	NA	coding protein	psRNATarget
AY106289.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:877   CGGAGCCCCCUUCAAACCAAA   897 Target Full Sequence	2.0	Zea mays PCO115173 mRNA sequence	NA	coding protein	psRNATarget
XM_008675325.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:1142   CGGAGCCCCCUUCAAACCAAA   1162 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278132 (LOC100278132), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008675324.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:1129   CGGAGCCCCCUUCAAACCAAA   1149 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278132 (LOC100278132), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008675323.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:1142   CGGAGCCCCCUUCAAACCAAA   1162 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278132 (LOC100278132), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008675322.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:1142   CGGAGCCCCCUUCAAACCAAA   1162 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278132 (LOC100278132), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675327.2	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:1145   CGGAGCCCCCUUCAAACCAAA   1165 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278132 (LOC100278132), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020551245.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:1146   CGGAGCCCCCUUCAAACCAAA   1166 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278132 (LOC100278132), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551246.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *|||||*|||||||||||||* targets:1149   CGGAGCCCCCUUCAAACCAAA   1169 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100278132 (LOC100278132), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU947090.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   *||*||||||||||*|||||| targets:684   CGGUGCUCCCUUCACACCAAU   704 Target Full Sequence	2.5	Zea mays clone 326920 mRNA sequence	NA	coding protein	psRNATarget
XM_020544365.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   |*|||||||||||||*||||* targets:876   UCGAGCUCCCUUCAAUCCAAA   896 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor MYB29 (LOC103638687), mRNA	NA	coding protein	psRNATarget
XM_020544355.1	ncRNA:21   ACCUCGAGGGAAGUUUGGUUA   1   |*|||||||||||||*||||* targets:876   UCGAGCUCCCUUCAAUCCAAA   896 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor MYB29 (LOC103638690), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).