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BaseInfo

ncRNA ID	zma-miR159e-5p
Species	Zea mays
Class	miRNA
Genome position	chr1:246032144-246032270 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	106 - CAGCUCCUGCAGCAUCUGUUC - 126
Stem-loop(if miRNA)	-- C       -G   C   U  UCGA    C    C  U   A     -    -A  GCAAGUCCG   G AGCUCCU  CAG AUC GU    GGCU GCCG GU CUG UGAUC CGGC  GC         G   | |||||||  ||| ||| ||    |||| |||| || ||| ||||| ||||  ||   C UCGAGGG  GUU UGG UA    CCGG CGGC CG GGC GCUGG GCCG  GG         C CA C       AA   -   U  --UG    U    -  C   G     A    GC  CGGCAGCGG
Stem-loop sequence	GCAGCUCCUGCAGCAUCUGUUCGAGGCUCGCCGCGUUCUGAUGAUCCGGCAGCGCAAGUCCGGCGGCGACGGCGGCGGCCGAGGUCGGCGGCGCCGGCUGGCCGUAUUGGUUUGAAGGGAGCUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008666784.2	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   ||||||||||||||||||||| targets:1507   GAACAGAUGCUGCAGGAGCUG   1527 Target Full Sequence	0.0	PREDICTED: Zea mays protein rough sheath 2-like (LOC103643621), mRNA	NA	coding protein	psRNATarget
XM_020552259.1	ncRNA:21   CUUGU-CUACGACGUCCUCGAC   1   *|=||-|||||||||||||||| targets:153   CAGCAAGAUGCUGCAGGAGCUG   174 Target Full Sequence	3.0	PREDICTED: Zea mays LOB domain-containing protein 12 (LOC103654272), mRNA	NA	coding protein	psRNATarget
EU966949.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   |==||*||||||||||||||| targets:617   GGGCACAUGCUGCAGGAGCUG   637 Target Full Sequence	2.0	Zea mays clone 298343 coronatine-insensitive protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156957.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   |==||*||||||||||||||| targets:617   GGGCACAUGCUGCAGGAGCUG   637 Target Full Sequence	2.0	Zea mays coronatine-insensitive protein 1 (LOC100284059), mRNA	NA	coding protein	psRNATarget
BT055710.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   |==||*||||||||||||||| targets:642   GGGCACAUGCUGCAGGAGCUG   662 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0128H10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153105.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   |==||*||||||||||||||| targets:642   GGGCACAUGCUGCAGGAGCUG   662 Target Full Sequence	2.0	Zea mays Coronatine-insensitive protein 1 (LOC100280173), mRNA	NA	coding protein	psRNATarget
EZ060614.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   *|=|||||||||||||*|||| targets:47   AAGCAGAUGCUGCAGGCGCUG   67 Target Full Sequence	2.5	TSA: Zea mays contig61736, mRNA sequence	NA	coding protein	psRNATarget
EZ114222.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   *|=|||||||||||||*|||| targets:48   AAGCAGAUGCUGCAGGCGCUG   68 Target Full Sequence	2.5	TSA: Zea mays contig49883, mRNA sequence	NA	coding protein	psRNATarget
XM_020551311.1	ncRNA:21   CUUGU-CUACGACGUCCUCGAC   1   *|=||-|||||||||||||||| targets:3948   CAGCAAGAUGCUGCAGGAGCUG   3969 Target Full Sequence	3.0	PREDICTED: Zea mays F10K1.23 (LOC100194299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KJ728026.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   *==|=|=|||||||||||||| targets:307   CGGCGGGUGCUGCAGGAGCUG   327 Target Full Sequence	3.0	Zea mays clone pUT6163 bHLH transcription factor (bHLH108) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001154026.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   *==|=|=|||||||||||||| targets:378   CGGCGGGUGCUGCAGGAGCUG   398 Target Full Sequence	3.0	Zea mays DNA binding like (LOC100281107), mRNA	NA	coding protein	psRNATarget
EU955620.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   *==|=|=|||||||||||||| targets:378   CGGCGGGUGCUGCAGGAGCUG   398 Target Full Sequence	3.0	Zea mays clone 1539722 DNA binding like mRNA, complete cds	NA	coding protein	psRNATarget
EU956611.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   *==|=|=|||||||||||||| targets:606   CGGCGGGUGCUGCAGGAGCUG   626 Target Full Sequence	3.0	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
XM_020551831.1	ncRNA:21   CUUGUCUACGACGUCCUCGAC   1   ||=|*||*||||||||||||| targets:1591   GAGCUGAGGCUGCAGGAGCUG   1611 Target Full Sequence	3.0	PREDICTED: Zea mays ent-kaur-16-ene synthase, chloroplastic-like (LOC103655286), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).