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BaseInfo

ncRNA ID	zma-miR164e-3p
Species	Zea mays
Class	miRNA
Genome position	chr1:46848652-46848767 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	95 - CAUGUGUCCGCCCUCUCCACC - 115
Stem-loop(if miRNA)	--       -A  A                      UUC    --C       CUC   G   GUGGAGA  GC GGACACGUGAGCGACCAUCCAG   CACU   CCGCUGG   GCU C   |||||||  || ||||||||||||||||||||||   ||||   |||||||   ||| U   CACCUCU  CG CCUGUGUACUUGCUGGUGGGUU   GUGG   GGCGGCC   CGA G GC       CC  -                      UGA    UUC       -CU   G
Stem-loop sequence	GUGGAGAAGCAGGACACGUGAGCGACCAUCCAGUUCCACUCCCGCUGGCUCGCUGCUGGAGCUCCCGGCGGCUUGGUGAGUUUGGGUGGUCGUUCAUGUGUCCGCCCUCUCCACCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235563.1	ncRNA:21   CCACCUCUCCCGCCUGUGUAC   1   ||||||||||||||||||||| targets:9   GGUGGAGAGGGCGGACACAUG   29 Target Full Sequence	0.0	Sequence 1558 from Patent EP2985353	NA	coding protein	psRNATarget
HI403129.1	ncRNA:21   CCACCUCUCCCGCCUGUGUAC   1   ||||||||||||||||||||| targets:9   GGUGGAGAGGGCGGACACAUG   29 Target Full Sequence	0.0	Sequence 1254 from Patent EP2074227	NA	coding protein	psRNATarget
HI403433.1	ncRNA:21   CCACCUCUCCCGCCUGUGUAC   1   ||||||||||||||||||||| targets:9   GGUGGAGAGGGCGGACACAUG   29 Target Full Sequence	0.0	Sequence 1558 from Patent EP2074227	NA	coding protein	psRNATarget
JB163590.1	ncRNA:21   CCACCUCUCCCGCCUGUGUAC   1   ||||||||||||||||||||| targets:9   GGUGGAGAGGGCGGACACAUG   29 Target Full Sequence	0.0	Sequence 1254 from Patent EP2559767	NA	coding protein	psRNATarget
JB163894.1	ncRNA:21   CCACCUCUCCCGCCUGUGUAC   1   ||||||||||||||||||||| targets:9   GGUGGAGAGGGCGGACACAUG   29 Target Full Sequence	0.0	Sequence 1558 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235259.1	ncRNA:21   CCACCUCUCCCGCCUGUGUAC   1   ||||||||||||||||||||| targets:9   GGUGGAGAGGGCGGACACAUG   29 Target Full Sequence	0.0	Sequence 1254 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).