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BaseInfo

ncRNA ID zma-miR164e-5p
Species Zea mays
Class miRNA
Genome position chr1:46848652-46848767 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 2 - UGGAGAAGCAGGACACGUGAG - 22
Stem-loop(if miRNA) --       -A  A                      UUC    --C       CUC   G
  GUGGAGA  GC GGACACGUGAGCGACCAUCCAG   CACU   CCGCUGG   GCU C
  |||||||  || ||||||||||||||||||||||   ||||   |||||||   ||| U
  CACCUCU  CG CCUGUGUACUUGCUGGUGGGUU   GUGG   GGCGGCC   CGA G
GC       CC  -                      UGA    UUC       -CU   G
Stem-loop sequence GUGGAGAAGCAGGACACGUGAGCGACCAUCCAGUUCCACUCCCGCUGGCUCGCUGCUGGAGCUCCCGGCGGCUUGGUGAGUUUGGGUGGUCGUUCAUGUGUCCGCCCUCUCCACCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403433.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |||||||||||||||||||||
targets:102   CUCACGUGUCCUGCUUCUCCA   122

0.0 Sequence 1558 from Patent EP2074227 NA coding protein psRNATarget
LQ235563.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |||||||||||||||||||||
targets:102   CUCACGUGUCCUGCUUCUCCA   122

0.0 Sequence 1558 from Patent EP2985353 NA coding protein psRNATarget
HI403129.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |||||||||||||||||||||
targets:102   CUCACGUGUCCUGCUUCUCCA   122

0.0 Sequence 1254 from Patent EP2074227 NA coding protein psRNATarget
JB163894.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |||||||||||||||||||||
targets:102   CUCACGUGUCCUGCUUCUCCA   122

0.0 Sequence 1558 from Patent EP2559767 NA coding protein psRNATarget
LQ235259.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |||||||||||||||||||||
targets:102   CUCACGUGUCCUGCUUCUCCA   122

0.0 Sequence 1254 from Patent EP2985353 NA coding protein psRNATarget
JB163590.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |||||||||||||||||||||
targets:102   CUCACGUGUCCUGCUUCUCCA   122

0.0 Sequence 1254 from Patent EP2559767 NA coding protein psRNATarget
BT084427.2
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*|||||||||||||||||=*
targets:96   CACACGUGUCCUGCUUCUCUU   116

2.5 Zea mays full-length cDNA clone ZM_BFb0112O15 mRNA, complete cds NA coding protein psRNATarget
JX428484.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:434   CACACGUGACCUGCUUCUCCA   454

1.5 Zea mays subsp. mays clone pUT3081 NAC30 NAC type transcription factor mRNA, partial cds NA coding protein psRNATarget
KJ728021.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:722   CACACGUGACCUGCUUCUCCA   742

1.5 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds NA coding protein psRNATarget
BT065898.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:796   CACACGUGACCUGCUUCUCCA   816

1.5 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds NA coding protein psRNATarget
HI403144.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1269 from Patent EP2074227 NA coding protein psRNATarget
HI403453.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1578 from Patent EP2074227 NA coding protein psRNATarget
HI403111.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1236 from Patent EP2074227 NA coding protein psRNATarget
JB163914.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1578 from Patent EP2559767 NA coding protein psRNATarget
JB163572.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1236 from Patent EP2559767 NA coding protein psRNATarget
JB163874.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1538 from Patent EP2559767 NA coding protein psRNATarget
LQ235583.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1578 from Patent EP2985353 NA coding protein psRNATarget
JB163605.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1269 from Patent EP2559767 NA coding protein psRNATarget
LQ235543.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1538 from Patent EP2985353 NA coding protein psRNATarget
LQ235274.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1269 from Patent EP2985353 NA coding protein psRNATarget
HI403413.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1538 from Patent EP2074227 NA coding protein psRNATarget
LQ235241.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  =*||||||*||||||||||||
targets:166   UGCACGUGCCCUGCUUCUCCA   186

1.5 Sequence 1236 from Patent EP2985353 NA coding protein psRNATarget
XM_008678972.2
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:863   CACACGUGACCUGCUUCUCCA   883

1.5 PREDICTED: Zea mays NAC domain protein NAC5 (NAC40), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678971.2
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:911   CACACGUGACCUGCUUCUCCA   931

1.5 PREDICTED: Zea mays NAC domain protein NAC5 (NAC40), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020538576.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:861   CACACGUGACCUGCUUCUCCA   881

1.5 PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020538575.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:880   CACACGUGACCUGCUUCUCCA   900

1.5 PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020538573.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:891   CACACGUGACCUGCUUCUCCA   911

1.5 PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538574.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:909   CACACGUGACCUGCUUCUCCA   929

1.5 PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001154298.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:988   CACACGUGACCUGCUUCUCCA   1008

1.5 Zea mays NAC domain protein NAC5 (NAC40), mRNA NA coding protein psRNATarget
EU956531.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:988   CACACGUGACCUGCUUCUCCA   1008

1.5 Zea mays clone 1565606 NAC domain protein NAC5 mRNA, complete cds NA coding protein psRNATarget
XM_020538577.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:916   CACACGUGACCUGCUUCUCCA   936

1.5 PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020538572.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*||||||||||||
targets:919   CACACGUGACCUGCUUCUCCA   939

1.5 PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544653.1
ncRNA:21   GAGUGC---ACAGGACGAAGAGGU   1
  =*||||---|||||||||||||||
targets:485   UCCACGGUAUGUCCUGCUUCUCCA   508

3.0 PREDICTED: Zea mays UDP-glycosyltransferase 90A2 (LOC103640082), mRNA NA coding protein psRNATarget
JX428530.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:692   CACACGUGACCUGCUUCUCCG   712

2.5 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds NA coding protein psRNATarget
NM_001157307.2
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:727   CACACGUGACCUGCUUCUCCG   747

2.5 Zea mays NAC domain protein NAC5 (LOC100284412), mRNA NA coding protein psRNATarget
BT063543.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:727   CACACGUGACCUGCUUCUCCG   747

2.5 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds NA coding protein psRNATarget
EU968233.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:782   CACACGUGACCUGCUUCUCCG   802

2.5 Zea mays clone 317195 NAC domain protein NAC5 mRNA, complete cds NA coding protein psRNATarget
XM_020547785.1
ncRNA:21   GAGUGCACAGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:828   CACACGUGACCUGCUUCUCCG   848

2.5 PREDICTED: Zea mays NAC domain protein NAC5 (LOC100284412), transcript variant X1, mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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