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BaseInfo

ncRNA ID	zma-miR167j-3p
Species	Zea mays
Class	miRNA
Genome position	chr1:12595523-12595631 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	89 - GAUCAUGUGGCAGUUUCAUU - 108
Stem-loop(if miRNA)	--            G          AA  AUA  U      --   UUC   --   GA   AUGAAGCUGCCA CAUGAUCUGA  CC   CG GUUCUU  UGA   CCA  UCU  A   |||||||||||| ||||||||||  ||   || ||||||  |||   |||  |||   UACUUUGACGGU GUACUAGACU  GG   GC CAAGAG  ACU   GGU  AGA  G UU            -          --  -CA  -      GU   UUC   UG   AA
Stem-loop sequence	AUGAAGCUGCCAGCAUGAUCUGAAACCAUACGUGUUCUUUGAUUCCCAUCUGAAGAAAGAGUUGGCUUUCAUGGAGAACCGACGGUCAGAUCAUGUGGCAGUUUCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ075140.1	ncRNA:20   UU-ACUUUGACGGUGUACUAG   1   ||-|||||||||||||||||= targets:69   AACUGAAACUGCCACAUGAUU   89 Target Full Sequence	3.0	TSA: Zea mays contig10777, mRNA sequence	NA	coding protein	psRNATarget
BT033798.1	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1040   AAUUAAACUGCCACAUGAGC   1059 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0163E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137072.1	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1040   AAUUAAACUGCCACAUGAGC   1059 Target Full Sequence	2.5	Zea mays Retrovirus-related Pol polyprotein LINE-1 (LOC100191643), mRNA	NA	coding protein	psRNATarget
XM_008659795.2	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1187   AAUUAAACUGCCACAUGAGC   1206 Target Full Sequence	2.5	PREDICTED: Zea mays Retrovirus-related Pol polyprotein LINE-1 (LOC100191643), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU969018.1	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1135   AAUUAAACUGCCACAUGAGC   1154 Target Full Sequence	2.5	Zea mays clone 325600 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065350.1	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1147   AAUUAAACUGCCACAUGAGC   1166 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0112D10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659796.2	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1076   AAUUAAACUGCCACAUGAGC   1095 Target Full Sequence	2.5	PREDICTED: Zea mays Retrovirus-related Pol polyprotein LINE-1 (LOC100191643), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT065389.1	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1164   AAUUAAACUGCCACAUGAGC   1183 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133J18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659794.2	ncRNA:20   UUACUUUGACGGUGUACUAG   1   |||*||||||||||||||*| targets:1209   AAUUAAACUGCCACAUGAGC   1228 Target Full Sequence	2.5	PREDICTED: Zea mays Retrovirus-related Pol polyprotein LINE-1 (LOC100191643), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).