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BaseInfo

ncRNA ID	zma-miR167j-5p
Species	Zea mays
Class	miRNA
Genome position	chr1:12595523-12595631 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - UGAAGCUGCCAGCAUGAUCUG - 22
Stem-loop(if miRNA)	--            G          AA  AUA  U      --   UUC   --   GA   AUGAAGCUGCCA CAUGAUCUGA  CC   CG GUUCUU  UGA   CCA  UCU  A   |||||||||||| ||||||||||  ||   || ||||||  |||   |||  |||   UACUUUGACGGU GUACUAGACU  GG   GC CAAGAG  ACU   GGU  AGA  G UU            -          --  -CA  -      GU   UUC   UG   AA
Stem-loop sequence	AUGAAGCUGCCAGCAUGAUCUGAAACCAUACGUGUUCUUUGAUUCCCAUCUGAAGAAAGAGUUGGCUUUCAUGGAGAACCGACGGUCAGAUCAUGUGGCAGUUUCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235254.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1249 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235559.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1554 from Patent EP2985353	NA	coding protein	psRNATarget
HI403429.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1554 from Patent EP2074227	NA	coding protein	psRNATarget
HI403124.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1249 from Patent EP2074227	NA	coding protein	psRNATarget
JB163585.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1249 from Patent EP2559767	NA	coding protein	psRNATarget
JB163890.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1554 from Patent EP2559767	NA	coding protein	psRNATarget
JB163518.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1182 from Patent EP2559767	NA	coding protein	psRNATarget
JB163802.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1466 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235471.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1466 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235187.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1182 from Patent EP2985353	NA	coding protein	psRNATarget
HI403341.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1466 from Patent EP2074227	NA	coding protein	psRNATarget
HI403057.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1182 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235115.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:93   CAGAUCAUGCUGGCAGCUUCA   113 Target Full Sequence	0.0	Sequence 1110 from Patent EP2985353	NA	coding protein	psRNATarget
HI402985.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:93   CAGAUCAUGCUGGCAGCUUCA   113 Target Full Sequence	0.0	Sequence 1110 from Patent EP2074227	NA	coding protein	psRNATarget
JB163446.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:93   CAGAUCAUGCUGGCAGCUUCA   113 Target Full Sequence	0.0	Sequence 1110 from Patent EP2559767	NA	coding protein	psRNATarget
BT062276.2	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   ||||||||||||||||||||| targets:997   CAGAUCAUGCUGGCAGCUUCA   1017 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0274F14 mRNA, complete cds	NA	coding protein	psRNATarget
BT055864.1	ncRNA:21   GUCUAGUACGACCGUCGAAGU   1   *|*||||||*||||||||||| targets:646   AAUAUCAUGAUGGCAGCUUCA   666 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348E11 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).