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BaseInfo

ncRNA ID	zma-miR528a-5p
Species	Zea mays
Class	miRNA
Genome position	chr1:6415592-6415714 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - UGGAAGGGGCAUGCAGAGGAG - 22
Stem-loop(if miRNA)	-            U   G     G  CAC   C    UGU    - GAAGAAGCAGCCGGGGCC  GUGGAAGGGGCA GCA AGGAG AG   GAG GAGG   GGCU G                  U  |||||||||||| ||| ||||| ||   ||| ||||   |||| |                  G  UACCUUCUCCGU CGU UCCUC UC   CUC CUCC   CUCG A                  U U            C   G     -  ---   A    --U    A CGCUCCCCAUAUAUCGUG
Stem-loop sequence	GUGGAAGGGGCAUGCAGAGGAGGAGCACGAGCGAGGUGUGGCUGGAAGAAGCAGCCGGGGCCUGUGUGCUAUAUACCCCUCGCAAGCUCUCCUCACUCCUCUCCUGUGCCUGCCUCUUCCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235111.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   ||||||||||||||||||||| targets:64   CUCCUCUGCAUGCCCCUUCCA   84 Target Full Sequence	0.0	Sequence 1106 from Patent EP2985353	NA	coding protein	psRNATarget
JB163442.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   ||||||||||||||||||||| targets:64   CUCCUCUGCAUGCCCCUUCCA   84 Target Full Sequence	0.0	Sequence 1106 from Patent EP2559767	NA	coding protein	psRNATarget
HI403264.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   ||||||||||||||||||||| targets:64   CUCCUCUGCAUGCCCCUUCCA   84 Target Full Sequence	0.0	Sequence 1389 from Patent EP2074227	NA	coding protein	psRNATarget
HI402981.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   ||||||||||||||||||||| targets:64   CUCCUCUGCAUGCCCCUUCCA   84 Target Full Sequence	0.0	Sequence 1106 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235394.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   ||||||||||||||||||||| targets:64   CUCCUCUGCAUGCCCCUUCCA   84 Target Full Sequence	0.0	Sequence 1389 from Patent EP2985353	NA	coding protein	psRNATarget
JB163725.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   ||||||||||||||||||||| targets:64   CUCCUCUGCAUGCCCCUUCCA   84 Target Full Sequence	0.0	Sequence 1389 from Patent EP2559767	NA	coding protein	psRNATarget
EU956024.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   *|||||*|||*|||||||||| targets:44   AUCCUCCGCACGCCCCUUCCA   64 Target Full Sequence	2.5	Zea mays clone 1555733 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149519.1	ncRNA:21   GAGGAGACGUACGGGGAAGGU   1   *|||||*|||*|||||||||| targets:44   AUCCUCCGCACGCCCCUUCCA   64 Target Full Sequence	2.5	Zea mays SNARE associated Golgi protein family (LOC100275452), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).