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BaseInfo

ncRNA ID vvi-miR477
Species Vitis vinifera
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - AUCUCCCUCAAAGGCUUCCAA - NA
Stem-loop(if miRNA) --G     GU   UC       AAGG             U G  GAU
   AAGUU  CAA  UCCCUCA    CUUCCAAUUUUCC G CU   U
   |||||  |||  |||||||    ||||||||||||| | ||
   UUCGA  GUU  AGGGGGU    GAAGGUUGAAAGG U GA   A
CCA     AG   CC       GACA             U G  ACU
Stem-loop sequence GAAGUUGUCAAUCUCCCUCAAAGGCUUCCAAUUUUCCUGGCUGAUUAUCAAGGUUGGAAAGUUGGAAGACAGUGGGGGACCUUGGAAGCUUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002263004.1
ncRNA:21   AACCUUCGGAAACUCCCUCUA   1
  ||||||||||||||||||||*
targets:751   UUGGAAGCCUUUGAGGGAGAG   771

1.0 PREDICTED: Vitis vinifera DELLA protein GAI (LOC100263271), mRNA NA coding protein psRNATarget
XM_002267502.3
ncRNA:21   AACCUUCGGAAACUCCCUCUA   1
  ||||||||||||||||||||*
targets:1340   UUGGAAGCCUUUGAGGGAGAG   1360

1.0 PREDICTED: Vitis vinifera scarecrow-like protein 21 (LOC100256348), mRNA NA coding protein psRNATarget
XM_003635593.3
ncRNA:21   AACCUUCGGAAACUCCCUCUA   1
  *||||||**||||||||||||
targets:1211   GUGGAAGAGUUUGAGGGAGAU   1231

2.5 PREDICTED: Vitis vinifera U-box domain-containing protein 8 (LOC100852694), mRNA NA coding protein psRNATarget
KA140020.1
ncRNA:21   AACCUUCGGAAACUCCCUCUA   1
  *||||||*||||||||||*||
targets:1307   GUGGAAGGCUUUGAGGGACAU   1327

2.5 TSA: Vitis vinifera Locus_9760_Transcript_4/9_Confidence_0.286.Vivi mRNA sequence NA coding protein psRNATarget
XM_002263224.3
ncRNA:21   AACCU-UCGGAAACUCCCUCUA   1
  ***||-||||||||||||||||
targets:1142   AAUGAUAGCCUUUGAGGGAGAU   1163

3.0 PREDICTED: Vitis vinifera uncharacterized LOC100245789 (LOC100245789), transcript variant X2, mRNA NA coding protein psRNATarget