| ncRNA ID | vvi-miR3631c |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | NA |
| Reference genome | NA |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | NA - CAUGUUGACAUCAUCCAAUAUA - NA |
| Stem-loop(if miRNA) |
U C UUU U UUU UAA CUAAUAAAUAUA U U UC -AU C -GACU A A C A C C C A U UAGA AAAUAAAUG AAAU AG AAGUAC UCUUAA GUU AAUU AGGUGGUGUUU UUUUUUG UGAAU AAAAGA UAAAAUAUUU UUUU UAUUUAGUUAAAAGUAAC UGUUGA AUCAUCCAAUAU A UAAA U AAC UAU A |||| ||||||||| |||| || |||||| |||||| ||| |||| ||||||||||| ||||||| ||||| |||||| |||||||||| |||| |||||||||||||||||| |||||| |||||||||||| | |||| | ||| ||| A AUUU UUUAUUUAU UUUA UC UUUAUG AGAAUU CAA UUAA UCCACCAUAAA AAAAAAC ACUUA UUUUUU GUUUUAUAAA AAAA AUAAGUCAAUUUUCAUUG ACAACU UAGUAGGUUAUA U AUUU A UUG AUA U U U --U U --U UAC ------------ U C UA AUC A AUCAU A A A C A C C A A |
| Stem-loop sequence | UAGAUAAAUAAAUGCAAAUUUUAGUAAGUACUUUUCUUAAUAAGUUCUAAUAAAUAUAAAUUUAGGUGGUGUUUUUUUUUUGUCUGAAUAUAAAAGACUAAAAUAUUUGACUUUUUAUAUUUAGUUAAAAGUAACAUGUUGACAUCAUCCAAUAUAACUAAACUCAACAUAUUAAUAAUAAGUUCACUUUAAUCAUAUUGGAUGAUAUCAACAAGUUACUUUUAACUGAAUAAAAAAUACUAAAAUAUUUUGAUUUUUUCUAAUUCAAUCAAAAAACAAAUACCACCUUAAUUAACCAUUUAAGAUGUAUUUUCUUAUUUUUAUUUAUUUUUUUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA161886.1 |
|
0.0 | TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002275318.4 |
|
2.5 | PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA163153.1 |
|
2.5 | TSA: Vitis vinifera Locus_19690_Transcript_4/6_Confidence_0.562.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010). |