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BaseInfo

ncRNA ID	vvi-miR3631a-3p
Species	Vitis vinifera
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - UAUAUUGGAUGAUGUCAACAA - NA
Stem-loop(if miRNA)	GUC                                              C          A                    A     C     CUA   A AGGUGGUGUUUG   UUUGGUUGAAUAGAAAAAGUCAAAAUAUUUGGCUUUUUCUAUUCAG UAAAAGUAAC UGUUGACAUCAUCCAAUAUA UUAAA UGAAC   UUG U ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||   ||| UCCACCACAAAC   AAACCGAUUUAUCUUUUUCGGUUUUAUAAACCGAAAAAGAUAAGUC AUUUUCAUUG ACAACUGUAGUAGGUUAUAU GAUUU ACUUG   AAC A             AAA                                              A          A                    C     U     ---   A
Stem-loop sequence	AGGUGGUGUUUGGUCUUUGGUUGAAUAGAAAAAGUCAAAAUAUUUGGCUUUUUCUAUUCAGCUAAAAGUAACAUGUUGACAUCAUCCAAUAUAAUUAAACUGAACCUAUUGAUAACAAGUUCAUUUUAGCUAUAUUGGAUGAUGUCAACAAGUUACUUUUAACUGAAUAGAAAAAGCCAAAUAUUUUGGCUUUUUCUAUUUAGCCAAAAAACAAACACCACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA159067.1	ncRNA:21   AACAACUGUAGUAGGUUAUAU   1   |||||*||||||||||||||| targets:1350   UUGUUAACAUCAUCCAAUAUA   1370 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:21   AACAACUGUAGUAGGUUAUAU   1   ***|||||||||||||||||| targets:1906   CCAUUGACAUCAUCCAAUAUA   1926 Target Full Sequence	1.0	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
XM_002272401.3	ncRNA:21   AACAACUGUAGUAGGUUAUAU   1   **|*||||||||||||||||* targets:1626   AAGAUGACAUCAUCCAAUAUU   1646 Target Full Sequence	2.0	PREDICTED: Vitis vinifera butyrate--CoA ligase AAE11, peroxisomal (LOC100253077), mRNA	NA	coding protein	psRNATarget
KA142775.1	ncRNA:21   AACAACUGUAGUAGGUUAUAU   1   *||||*|||||||||||*||| targets:1297   GUGUUAACAUCAUCCAACAUA   1317 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142774.1	ncRNA:21   AACAACUGUAGUAGGUUAUAU   1   *||||*|||||||||||*||| targets:1397   GUGUUAACAUCAUCCAACAUA   1417 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).