| ncRNA ID | vvi-miR535b |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chrUn:25369703-25369803 [-] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 71 - UGACAACGAGAGAGAGCACGC - 91 |
| Stem-loop(if miRNA) |
--UGUA CU A A CA U CG AUUG UGACA CGAGAGAGAGCACGCU GU GCA UCAUG A |||| ||||| |||||||||||||||| || ||| ||||| G UAAC ACUGU GCUCUCUCUCGUGCGG CA UGU AGUAC G CUCUUC AU C A UG C AA |
| Stem-loop sequence | UGUAAUUGCUUGACAACGAGAGAGAGCACGCUAGUCAGCAUUCAUGCGAGGAACAUGACUGUGUACAGGCGUGCUCUCUCUCGCUGUCAUACAAUCUUCUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JA894872.1 |
|
1.5 | Sequence 189 from Patent WO2011067745 | NA | coding protein | psRNATarget | |||||||||
| XM_010651936.2 |
|
2.0 | PREDICTED: Vitis vinifera probable DNA primase large subunit (LOC100244238), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002285643.4 |
|
2.0 | PREDICTED: Vitis vinifera probable DNA primase large subunit (LOC100244238), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA163184.1 |
|
2.0 | TSA: Vitis vinifera Locus_15557_Transcript_2/2_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA163183.1 |
|
2.0 | TSA: Vitis vinifera Locus_15557_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA173507.1 |
|
2.5 | TSA: Vitis vinifera Locus_9864_Transcript_10/10_Confidence_0.250.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA173953.1 |
|
2.5 | TSA: Vitis vinifera Locus_9864_Transcript_5/10_Confidence_0.222.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA168138.1 |
|
2.5 | TSA: Vitis vinifera Locus_9864_Transcript_8/10_Confidence_0.222.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA168137.1 |
|
2.5 | TSA: Vitis vinifera Locus_9864_Transcript_3/10_Confidence_0.194.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002273673.4 |
|
2.5 | PREDICTED: Vitis vinifera probable apyrase 6 (LOC100244785), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010653701.2 |
|
2.5 | PREDICTED: Vitis vinifera probable apyrase 6 (LOC100244785), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA136038.1 |
|
2.5 | TSA: Vitis vinifera Locus_11333_Transcript_4/10_Confidence_0.425.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |