| ncRNA ID | vvi-miR3639-3p |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr9:21823006-21823219 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 119 - GAGCUUUUGGCUUCUCAGAAGUCA - 142 |
| Stem-loop(if miRNA) |
U UC U -- AUACACGA G CG C A - A AA GU CAAAAGC UUG UGA AUAACAAUG U AAGCUU UUAUAAAAAAA UUUUAA ACCU GUUUGGAUUGACUUCUGA AGGCUAAAAGCUCUUAUU G || ||||||| ||| ||| ||||||||| | |||||| ||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||| C CA GUUUUCG AAC ACU UAUUGUUGC A UUUGAA AAUAUUUUUUU AAAAUU UGGA CAAACCUAACUGAAGACU UUCGGUUUUCGAGAAUAA U U -C U AU ------AA G AU - C A C AU |
| Stem-loop sequence | GUUCAAAAGCUCUUGUUGAAUAACAAUGAUACACGAUGAAGCUUCGUUAUAAAAAAACUUUUAAAACCUGUUUGGAUUGACUUCUGAAAGGCUAAAAGCUCUUAUUAAGCUUAAAUAAGAGCUUUUGGCUUCUCAGAAGUCAAUCCAAACAAGGUCUUAAAAUUUUUUUAUAAUAAAGUUUGAAACGUUGUUAUUAUCAUCAACGCUUUUGUAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA157293.1 |
|
1.5 | TSA: Vitis vinifera Locus_1239_Transcript_6/10_Confidence_0.452.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA162870.1 |
|
1.5 | TSA: Vitis vinifera Locus_8335_Transcript_9/9_Confidence_0.565.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA162869.1 |
|
1.5 | TSA: Vitis vinifera Locus_8335_Transcript_8/9_Confidence_0.565.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010). |