| ncRNA ID | vvi-miR169g |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr8:21104451-21104571 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 13 - CAGCCAAGGAUGACUUGCCGA - 33 |
| Stem-loop(if miRNA) |
-- UAUG C UG A C UAC CCAU CUU C GAAAG GUG AGCCAAGGA ACUUGCCG CU UC UUAG CUGC UCUC A ||||| ||| ||||||||| |||||||| || || |||| |||| |||| CUUUC UAC UCGGUUUCU UGAACGGC GA AG AGUC GACG GGAG A GU UUCG A GU C - --U --AU UUC G |
| Stem-loop sequence | GAAAGUAUGGUGCAGCCAAGGAUGACUUGCCGACUCUCUACUUAGCCAUCUGCCUUUCUCCAAGGAGGCUUGCAGUACUGAUGAAGCCGGCAAGUUGUCUUUGGCUACAUGCUUCUUUCUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA146519.1 |
|
0.0 | TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010656181.2 |
|
1.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X5, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA170941.1 |
|
1.0 | TSA: Vitis vinifera Locus_10060_Transcript_1/3_Confidence_0.600.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010656180.2 |
|
1.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X4, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA170942.1 |
|
1.0 | TSA: Vitis vinifera Locus_10060_Transcript_2/3_Confidence_0.400.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002274422.3 |
|
1.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA170940.1 |
|
1.0 | TSA: Vitis vinifera Locus_10060_Transcript_3/3_Confidence_0.600.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010656177.2 |
|
1.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010656179.2 |
|
1.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019221448.1 |
|
3.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010654961.2 |
|
3.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002263757.3 |
|
3.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X1, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |