ncRNA ID | vvi-miR2111-3p |
Species | Vitis vinifera |
Class | miRNA |
Genome position | chr8:15368653-15368760 [-] |
Reference genome | Genoscope-20100122 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 20 - GUCCUCUGGUUGCAGAUUACU - 40 |
Stem-loop(if miRNA) |
GCAA      --  C    UC            U  U    U    AUAA   UAU     UAUUGG  GU AGGA  GGGUAAUCUGCA CC GAGG CUAG    GUA   C     ||||||  || ||||  |||||||||||| || |||| ||||    |||   U     GUAACC  CA UCCU  UUCAUUAGACGU GG CUCC GAUC    CGU   C ---C      GU  C    UC            U  U    U    --GA   UGC |
Stem-loop sequence | GCAAUAUUGGGUCAGGAUCGGGUAAUCUGCAUCCUGAGGUCUAGAUAAGUAUAUCUCCGUUGCAGCUAGUCCUCUGGUUGCAGAUUACUUCUUCCUCACUGCCAAUGC |
1 | PMID:19854858
"Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"; Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ; Plant Physiol. 151:2120-2132(2009). |