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BaseInfo

ncRNA ID vvi-miR2111-3p
Species Vitis vinifera
Class miRNA
Genome position chr8:15368653-15368760 [-]
Reference genome Genoscope-20100122
Source miRBase
Length 21
Mature sequence(if miRNA) 20 - GUCCUCUGGUUGCAGAUUACU - 40
Stem-loop(if miRNA) GCAA      --  C    UC            U  U    U    AUAA   UAU
    UAUUGG  GU AGGA  GGGUAAUCUGCA CC GAGG CUAG    GUA   C
    ||||||  || ||||  |||||||||||| || |||| ||||    |||   U
    GUAACC  CA UCCU  UUCAUUAGACGU GG CUCC GAUC    CGU   C
---C      GU  C    UC            U  U    U    --GA   UGC
Stem-loop sequence GCAAUAUUGGGUCAGGAUCGGGUAAUCUGCAUCCUGAGGUCUAGAUAAGUAUAUCUCCGUUGCAGCUAGUCCUCUGGUUGCAGAUUACUUCUUCCUCACUGCCAAUGC

Reference

1 PMID:19854858
"Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing";
Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ;
Plant Physiol. 151:2120-2132(2009).