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BaseInfo

ncRNA ID	vvi-miR2111-5p
Species	Vitis vinifera
Class	miRNA
Genome position	chr8:15368653-15368760 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	66 - UAAUCUGCAUCCUGAGGUCUA - 86
Stem-loop(if miRNA)	GCAA      --  C    UC            U  U    U    AUAA   UAU     UAUUGG  GU AGGA  GGGUAAUCUGCA CC GAGG CUAG    GUA   C     ||||||  || ||||  |||||||||||| || |||| ||||    |||   U     GUAACC  CA UCCU  UUCAUUAGACGU GG CUCC GAUC    CGU   C ---C      GU  C    UC            U  U    U    --GA   UGC
Stem-loop sequence	GCAAUAUUGGGUCAGGAUCGGGUAAUCUGCAUCCUGAGGUCUAGAUAAGUAUAUCUCCGUUGCAGCUAGUCCUCUGGUUGCAGAUUACUUCUUCCUCACUGCCAAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002274185.3	ncRNA:21   AUCUGGAGUCCUACGUCUAAU   1   **|||||||||||||||*||* targets:1788   GCGACCUCAGGAUGCAGUUUC   1808 Target Full Sequence	2.5	PREDICTED: Vitis vinifera GTP-binding protein ERG (LOC100244086), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019225388.1	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:409   UAGAUACUCAGGAUGCAGAUUA   430 Target Full Sequence	3.0	PREDICTED: Vitis vinifera F-box/kelch-repeat protein At3g27150 (LOC100267013), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_002273681.3	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:674   UAGAUACUCAGGAUGCAGAUUA   695 Target Full Sequence	3.0	PREDICTED: Vitis vinifera F-box/kelch-repeat protein At3g27150 (LOC100267013), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010662460.2	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:744   UAGAUACUCAGGAUGCAGAUUA   765 Target Full Sequence	3.0	PREDICTED: Vitis vinifera F-box/kelch-repeat protein At3g27150 (LOC100267013), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA146139.1	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:764   UAGAUACUCAGGAUGCAGAUUA   785 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_14728_Transcript_6/10_Confidence_0.192.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146138.1	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:970   UAGAUACUCAGGAUGCAGAUUA   991 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_14728_Transcript_4/10_Confidence_0.462.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146140.1	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:1142   UAGAUACUCAGGAUGCAGAUUA   1163 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_14728_Transcript_8/10_Confidence_0.423.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146141.1	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:1295   UAGAUACUCAGGAUGCAGAUUA   1316 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_14728_Transcript_9/10_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146137.1	ncRNA:21   AUCUG-GAGUCCUACGUCUAAU   1   ||||=-|||||||||||||||| targets:834   UAGAUACUCAGGAUGCAGAUUA   855 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_14728_Transcript_7/10_Confidence_0.423.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19854858 "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"; Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ; Plant Physiol. 151:2120-2132(2009).