| ncRNA ID | vvi-miR172d |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr8:12667173-12667281 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 23 |
| Mature sequence(if miRNA) | 77 - UGAGAAUCUUGAUGAUGCUGCAU - 99 |
| Stem-loop(if miRNA) |
--GUUA U A C - -UGGAAG U GC GAUGCAGCAUCAUCAAGAUUC CA C CAA GGCAG GAUG || ||||||||||||||||||||| || | ||| ||||| |||C CG UUACGUCGUAGUAGUUCUAAG GU G GUU CCGUC CUAA AAGUGA C A A A UUAGAAA U |
| Stem-loop sequence | GUUAGCUGAUGCAGCAUCAUCAAGAUUCACACCCAAUGGAAGGGCAGUGAUGCAAUCUCUGCCAAAGAUUUUGAGAUGAGAAUCUUGAUGAUGCUGCAUUCGCAGUGAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA165581.1 |
|
0.0 | TSA: Vitis vinifera Locus_15317_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA165582.1 |
|
0.0 | TSA: Vitis vinifera Locus_15317_Transcript_2/3_Confidence_0.571.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA168557.1 |
|
0.0 | TSA: Vitis vinifera Locus_12123_Transcript_3/4_Confidence_0.444.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010652795.2 |
|
1.5 | PREDICTED: Vitis vinifera ethylene-responsive transcription factor RAP2-7 (LOC100246815), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002284713.4 |
|
1.5 | PREDICTED: Vitis vinifera ethylene-responsive transcription factor RAP2-7 (LOC100246815), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA165005.1 |
|
1.5 | TSA: Vitis vinifera Locus_11208_Transcript_4/10_Confidence_0.372.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA165003.1 |
|
1.5 | TSA: Vitis vinifera Locus_11208_Transcript_10/10_Confidence_0.488.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA165007.1 |
|
1.5 | TSA: Vitis vinifera Locus_11208_Transcript_9/10_Confidence_0.465.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA165006.1 |
|
1.5 | TSA: Vitis vinifera Locus_11208_Transcript_5/10_Confidence_0.488.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA165004.1 |
|
1.5 | TSA: Vitis vinifera Locus_11208_Transcript_2/10_Confidence_0.488.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA141640.1 |
|
1.5 | TSA: Vitis vinifera Locus_11059_Transcript_1/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA141641.1 |
|
1.5 | TSA: Vitis vinifera Locus_11059_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA141642.1 |
|
1.5 | TSA: Vitis vinifera Locus_11059_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |