Search result

BaseInfo

ncRNA ID	vvi-miR164c
Species	Vitis vinifera
Class	miRNA
Genome position	chr8:10080460-10080556 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGGAGAAGCAGGGCACGUGCA - 31
Stem-loop(if miRNA)	----UUG      AU    AA   G GCACGUGCAUUACUAGCUCAUGCA        AGCAAG  GGAG  GCA G                        C        ||||||  ||||  ||| |                        C        UCGUUC  UCUC  GAU U                        A AGUUUCG      GU    -A   - GAGCUCGUUUUCUAAUAACCAAAC
Stem-loop sequence	UUGAGCAAGAUGGAGAAGCAGGGCACGUGCAUUACUAGCUCAUGCACCACAAACCAAUAAUCUUUUGCUCGAGUUAGACUCUUGCUUGCUGCUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002284789.3	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||||||||||||||| targets:1002   CUCACGUGCCCUGCUUCUCCA   1022 Target Full Sequence	0.0	PREDICTED: Vitis vinifera NAC domain-containing protein 100-like (LOC100251801), mRNA	NA	coding protein	psRNATarget
XM_010645872.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||||||||||||*||||||| targets:1330   AGCACGUGCCCUGGUUCUCCA   1350 Target Full Sequence	1.5	PREDICTED: Vitis vinifera protein CUP-SHAPED COTYLEDON 2 (LOC100246914), mRNA	NA	coding protein	psRNATarget
KA145008.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:576   CUCACGUGACCUGCUUCUCCA   596 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_18694_Transcript_3/4_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA145009.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:801   CUCACGUGACCUGCUUCUCCA   821 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_18694_Transcript_4/4_Confidence_0.625.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002283775.3	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:947   CUCACGUGACCUGCUUCUCCA   967 Target Full Sequence	1.5	PREDICTED: Vitis vinifera NAC domain-containing protein 100 (LOC100250998), mRNA	NA	coding protein	psRNATarget
XM_002271422.3	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||= targets:741   AGCAAGUGCCCUGCUUCUCCG   761 Target Full Sequence	2.0	PREDICTED: Vitis vinifera NAC domain-containing protein 21/22 (LOC100254239), mRNA	NA	coding protein	psRNATarget
KA155909.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||= targets:841   AGCAAGUGCCCUGCUUCUCCG   861 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_21942_Transcript_2/2_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA155908.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||= targets:1693   AGCAAGUGCCCUGCUUCUCCG   1713 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_21942_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).