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BaseInfo

ncRNA ID	vvi-miR3624-3p
Species	Vitis vinifera
Class	miRNA
Genome position	chr8:2139190-2139391 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	181 - UCAGGGCAGCAGCAUACUACU - 201
Stem-loop(if miRNA)	G                   U    UAUCU     A       -C       -          A           CUAUGGU   UUCUCUGCUGGGUUAAG  GGUAGUAUGCUGCUGUCUU AGAA     GGAUG AGUUUAU  UCUGCAA GGUGGCAAGA CAUCAAGAGUA       GGC                 G  ||||||||||||||||||| ||||     ||||| |||||||  ||||||| |||||||||| |||||||||||       |||  UCAUCAUACGACGACGGGA UCUU     CUUAC UCGAGUA  AGACGUU CCACCGUUUU GUAGUUCUCAU       UAG                 C U                   C    CGACU     C       CU       U          G           --AACUA   UUUAGUGGGGUCUUCUU
Stem-loop sequence	GGGUAGUAUGCUGCUGUCUUUAGAAUAUCUGGAUGAAGUUUAUCUCUGCAAGGUGGCAAGAACAUCAAGAGUACUAUGGUGGCUUCUCUGCUGGGUUAAGGCUUCUUCUGGGGUGAUUUGAUAUCAAUACUCUUGAUGGUUUUGCCACCUUUGCAGAUCAUGAGCUCCAUUCUCAGCUUCUCAGGGCAGCAGCAUACUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA173529.1	ncRNA:21   UCAUCAUACGACGACGGGACU   1   ||||||||||||||||||||| targets:470   AGUAGUAUGCUGCUGCCCUGA   490 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_22326_Transcript_2/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172505.1	ncRNA:21   UCAUCAUACGACGACGGGACU   1   ||||||||||||||||||||| targets:387   AGUAGUAUGCUGCUGCCCUGA   407 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_23064_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ379143.1	ncRNA:21   UCAUCAUACGACGACGGGACU   1   ||||||||||||||||||||| targets:213   AGUAGUAUGCUGCUGCCCUGA   233 Target Full Sequence	0.0	Vitis vinifera clone SS0AEB11YF11	NA	coding protein	psRNATarget
XM_019218079.1	ncRNA:21   UCAUCAUACGACGACGGGACU   1   ||||||||||||||||||||| targets:214   AGUAGUAUGCUGCUGCCCUGA   234 Target Full Sequence	0.0	PREDICTED: Vitis vinifera sulfated surface glycoprotein 185 (LOC100852467), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_003634992.3	ncRNA:21   UCAUCAUACGACGACGGGACU   1   ||||||||||||||||||||| targets:232   AGUAGUAUGCUGCUGCCCUGA   252 Target Full Sequence	0.0	PREDICTED: Vitis vinifera sulfated surface glycoprotein 185 (LOC100852467), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010647974.2	ncRNA:21   UCAUCAUACGACGACGGGACU   1   ||||||||||||||||||||| targets:240   AGUAGUAUGCUGCUGCCCUGA   260 Target Full Sequence	0.0	PREDICTED: Vitis vinifera sulfated surface glycoprotein 185 (LOC100852467), transcript variant X2, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).