ncRNA ID | vvi-miR3624-5p |
Species | Vitis vinifera |
Class | miRNA |
Genome position | chr8:2139190-2139391 [+] |
Reference genome | Genoscope-20100122 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 4 - UAGUAUGCUGCUGUCUUUAGA - 24 |
Stem-loop(if miRNA) |
G                   U    UAUCU     A       -C       -          A           CUAUGGU   UUCUCUGCUGGGUUAAG  GGUAGUAUGCUGCUGUCUU AGAA     GGAUG AGUUUAU  UCUGCAA GGUGGCAAGA CAUCAAGAGUA       GGC                 G  ||||||||||||||||||| ||||     ||||| |||||||  ||||||| |||||||||| |||||||||||       |||  UCAUCAUACGACGACGGGA UCUU     CUUAC UCGAGUA  AGACGUU CCACCGUUUU GUAGUUCUCAU       UAG                 C U                   C    CGACU     C       CU       U          G           --AACUA   UUUAGUGGGGUCUUCUU |
Stem-loop sequence | GGGUAGUAUGCUGCUGUCUUUAGAAUAUCUGGAUGAAGUUUAUCUCUGCAAGGUGGCAAGAACAUCAAGAGUACUAUGGUGGCUUCUCUGCUGGGUUAAGGCUUCUUCUGGGGUGAUUUGAUAUCAAUACUCUUGAUGGUUUUGCCACCUUUGCAGAUCAUGAGCUCCAUUCUCAGCUUCUCAGGGCAGCAGCAUACUACUU |
1 | PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010). |