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BaseInfo

ncRNA ID vvi-miR3624-5p
Species Vitis vinifera
Class miRNA
Genome position chr8:2139190-2139391 [+]
Reference genome Genoscope-20100122
Source miRBase
Length 21
Mature sequence(if miRNA) 4 - UAGUAUGCUGCUGUCUUUAGA - 24
Stem-loop(if miRNA) G                   U    UAUCU     A       -C       -          A           CUAUGGU   UUCUCUGCUGGGUUAAG
 GGUAGUAUGCUGCUGUCUU AGAA     GGAUG AGUUUAU  UCUGCAA GGUGGCAAGA CAUCAAGAGUA       GGC                 G
 ||||||||||||||||||| ||||     ||||| |||||||  ||||||| |||||||||| |||||||||||       |||
 UCAUCAUACGACGACGGGA UCUU     CUUAC UCGAGUA  AGACGUU CCACCGUUUU GUAGUUCUCAU       UAG                 C
U                   C    CGACU     C       CU       U          G           --AACUA   UUUAGUGGGGUCUUCUU
Stem-loop sequence GGGUAGUAUGCUGCUGUCUUUAGAAUAUCUGGAUGAAGUUUAUCUCUGCAAGGUGGCAAGAACAUCAAGAGUACUAUGGUGGCUUCUCUGCUGGGUUAAGGCUUCUUCUGGGGUGAUUUGAUAUCAAUACUCUUGAUGGUUUUGCCACCUUUGCAGAUCAUGAGCUCCAUUCUCAGCUUCUCAGGGCAGCAGCAUACUACUU

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).