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BaseInfo

ncRNA ID	vvi-miR2950-5p
Species	Vitis vinifera
Class	miRNA
Genome position	chr7:14340407-14340513 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	25 - UUCCAUCUCUUGCACACUGGA - 45
Stem-loop(if miRNA)	UGGCUUA      C UG                U       UG   --    GC        CAUGGG U  UGAUGUAUUCCAUCUC UGCACAC  GAC  CAGC  U        |||||| |  |||||||||||||||| |||||||  |||  ||||        GUACUU G  ACUACAUAAGGUAGGG ACGUGUG  UUG  GUCG  C -GGUGUA      A GU                C       GU   AC    AC
Stem-loop sequence	UGGCUUACAUGGGCUUGUGAUGUAUUCCAUCUCUUGCACACUGGACCAGCGCUCCAGCUGCAGUUUGGUGUGCACGGGAUGGAAUACAUCAUGGAUUCAUGAUGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010650181.2	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   |=||||||||||*|||||||| targets:353   UUCAGUGUGCAAAAGAUGGAA   373 Target Full Sequence	1.5	PREDICTED: Vitis vinifera F-box only protein 13 (LOC100262953), mRNA	NA	coding protein	psRNATarget
FQ393991.1	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   ||*|*|*|||||||||||||| targets:342   UCAACUUUGCAAGAGAUGGAA   362 Target Full Sequence	3.0	Vitis vinifera clone SS0AFA23YC22	NA	coding protein	psRNATarget
FQ391985.1	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   ||*|*|*|||||||||||||| targets:388   UCAACUUUGCAAGAGAUGGAA   408 Target Full Sequence	3.0	Vitis vinifera clone SS0AFA8YB11	NA	coding protein	psRNATarget
FQ398040.1	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   ||*|*|*|||||||||||||| targets:390   UCAACUUUGCAAGAGAUGGAA   410 Target Full Sequence	3.0	Vitis vinifera clone SS0AEB4YN14	NA	coding protein	psRNATarget
FQ384350.1	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   ||*|*|*|||||||||||||| targets:391   UCAACUUUGCAAGAGAUGGAA   411 Target Full Sequence	3.0	Vitis vinifera clone SS0AAG1YN15	NA	coding protein	psRNATarget
XM_002276322.4	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   ||*|*|*|||||||||||||| targets:511   UCAACUUUGCAAGAGAUGGAA   531 Target Full Sequence	3.0	PREDICTED: Vitis vinifera PHD finger protein ALFIN-LIKE 4 (LOC100263503), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019222320.1	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   ||*|*|*|||||||||||||| targets:525   UCAACUUUGCAAGAGAUGGAA   545 Target Full Sequence	3.0	PREDICTED: Vitis vinifera PHD finger protein ALFIN-LIKE 4 (LOC100263503), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_003635033.1	ncRNA:21   AGGUCACACGUUCUCUACCUU   1   ||*||**|||||||||||||| targets:17   UCAAGGCUGCAAGAGAUGGAA   37 Target Full Sequence	3.0	PREDICTED: Vitis vinifera ankyrin repeat-containing protein ITN1 (LOC100852638), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).