| ncRNA ID | vvi-miR408 |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr7:5011935-5012041 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 77 - AUGCACUGCCUCUUCCCUGGC - 97 |
| Stem-loop(if miRNA) |
A GA -- C A A UAUU AAGAA AGAG AGA CGGGGA GAGGUAGUGCAUGG UGGA C AACAG U |||| ||| |||||| |||||||||||||| |||| | ||||| UCUC UCU GUCCCU CUCCGUCACGUACC AUCU G UUGUC G C UG CG U C C -UUU GAAUU |
| Stem-loop sequence | AAGAGGAAGACGGGGACGAGGUAGUGCAUGGAUGGAACUAUUAACAGAAGAAUGUUAAGCUGUUUUUGCUCUACCCAUGCACUGCCUCUUCCCUGGCUCUGUCUCUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA153651.1 |
|
2.0 | TSA: Vitis vinifera Locus_47441_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002266537.3 |
|
2.0 | PREDICTED: Vitis vinifera basic blue protein (LOC100248861), mRNA | NA | coding protein | psRNATarget | |||||||||
| FQ397759.1 |
|
2.5 | Vitis vinifera clone SS0AEB5YM13 | NA | coding protein | psRNATarget | |||||||||
| FQ389807.1 |
|
2.5 | Vitis vinifera clone SS0AEB19YJ21 | NA | coding protein | psRNATarget | |||||||||
| FQ397388.1 |
|
2.5 | Vitis vinifera clone SS0AEB6YP11 | NA | coding protein | psRNATarget | |||||||||
| KA167605.1 |
|
2.5 | TSA: Vitis vinifera Locus_13174_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| FQ379309.1 |
|
2.5 | Vitis vinifera clone SS0AEB10YN08 | NA | coding protein | psRNATarget | |||||||||
| XM_002266886.4 |
|
2.5 | PREDICTED: Vitis vinifera basic blue protein (LOC100244820), mRNA | NA | coding protein | psRNATarget | |||||||||
| FQ385265.1 |
|
2.5 | Vitis vinifera clone SS0AEB32YM22 | NA | coding protein | psRNATarget | |||||||||
| FQ378465.1 |
|
2.5 | Vitis vinifera clone SS0AEB13YH20 | NA | coding protein | psRNATarget | |||||||||
| FQ388717.1 |
|
2.5 | Vitis vinifera clone SS0AEB22YD05 | NA | coding protein | psRNATarget | |||||||||
| FQ390246.1 |
|
2.5 | Vitis vinifera clone SS0AEB18YE20 | NA | coding protein | psRNATarget | |||||||||
| FQ387126.1 |
|
2.5 | Vitis vinifera clone SS0AEB27YJ16 | NA | coding protein | psRNATarget | |||||||||
| FQ387586.1 |
|
2.5 | Vitis vinifera clone SS0AEB25YP09 | NA | coding protein | psRNATarget | |||||||||
| FQ385153.1 |
|
2.5 | Vitis vinifera clone SS0AEB3YD09 | NA | coding protein | psRNATarget | |||||||||
| FQ396756.1 |
|
2.5 | Vitis vinifera clone SS0AEB8YO23 | NA | coding protein | psRNATarget | |||||||||
| FQ384993.1 |
|
2.5 | Vitis vinifera clone SS0AEB3YL19 | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |