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BaseInfo

ncRNA ID	vvi-miR845c
Species	Vitis vinifera
Class	miRNA
Genome position	chr7:207778-207867 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AGGCUCUGAUACCAAUUGAUG - 31
Stem-loop(if miRNA)	--CAA         --     U   U            GGC    UC      UUAUGUGUU  UUGGU GUC GAGUUUCAUGUU   AAUU  U      |||||||||  ||||| ||| ||||||||||||   ||||  U      AAUACGUAG  AACCA UAG CUCGGAGUACAA   UUAG  A UACCA         UU     -   U            --A    UA
Stem-loop sequence	CAAUUAUGUGUUUUGGUUGUCUGAGUUUCAUGUUGGCAAUUUCUUAAUGAUUAAACAUGAGGCUCUGAUACCAAUUGAUGCAUAAACCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010658145.2	ncRNA:21   GUAGUUAACCAUAGUCUCGGA   1   ||*||||||||||||||||=| targets:41   CAACAAUUGGUAUCAGAGCUU   61 Target Full Sequence	2.5	PREDICTED: Vitis vinifera uncharacterized LOC104880663 (LOC104880663), mRNA	NA	coding protein	psRNATarget
XM_019225147.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGA   1   =|*|||*|||||||||||||* targets:4236   UAACAAGUGGUAUCAGAGCCC   4256 Target Full Sequence	3.0	PREDICTED: Vitis vinifera probable leucine-rich repeat receptor-like protein kinase At1g35710 (LOC100262962), mRNA	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).