| ncRNA ID | vvi-miR172a |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr6:17652412-17652521 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 80 - UGAAUCUUGAUGAUGCUACAU - 100 |
| Stem-loop(if miRNA) |
--UA - G C UCAUCCUUGAAAAGUU CA GAUAACAUCA UUGC C AUG AGCAUCAUCAAGAUUC UGG GA C |||| | ||| |||||||||||||||| ||| || C AACG G UAC UCGUAGUAGUUCUAAG GUA CG A AACA C - A ---------------U -- UUUACGUGCC |
| Stem-loop sequence | UAUUGCCGAUGCAGCAUCAUCAAGAUUCUCAUCCUUGAAAAGUUUGGCAGAGAUAACAUCACCACCGUGCAUUUGCAUGUGAAUCUUGAUGAUGCUACAUGCGCAAACAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA141640.1 |
|
1.0 | TSA: Vitis vinifera Locus_11059_Transcript_1/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA141641.1 |
|
1.0 | TSA: Vitis vinifera Locus_11059_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA141642.1 |
|
1.0 | TSA: Vitis vinifera Locus_11059_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA165581.1 |
|
2.0 | TSA: Vitis vinifera Locus_15317_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA165582.1 |
|
2.0 | TSA: Vitis vinifera Locus_15317_Transcript_2/3_Confidence_0.571.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA168557.1 |
|
2.0 | TSA: Vitis vinifera Locus_12123_Transcript_3/4_Confidence_0.444.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |