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BaseInfo

ncRNA ID	vvi-miR319f
Species	Vitis vinifera
Class	miRNA
Genome position	chr6:9137255-9137447 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	162 - UUGGACUGAAGGGAGCUCCCU - 182
Stem-loop(if miRNA)	-----     UUU   A                 CU      UG  UU      UU  A   G  G   AC        U  AA        AAUG   AU      AGUGG   AAG GAGCUUCCUUCAGUCCA  CAUGGA  GG  AGGGGU  GG UUA CU CCG  UCAUUCAU CA  CACAGUAG    GAA  G      |||||   ||| |||||||||||||||||  ||||||  ||  ||||||  || ||| || |||  |||||||| ||  ||||||||    |||      UCAUC   UUC CUCGAGGGAAGUCAGGU  GUGUCU  UC  UUCCUA  UU AAU GA GGC  AGUAAGUG GU  GUGUCAUC    UUU  G UUUUG     ---   C                 UC      GU  UU      CU  A   G  G   GU        U  AA        ---A   GA
Stem-loop sequence	AGUGGUUUAAGAGAGCUUCCUUCAGUCCACUCAUGGAUGGGUUAGGGGUUUGGAUUAGCUGCCGACUCAUUCAUUCAAACACAGUAGAAUGGAAAUGGAGUUUACUACUGUGAAUGUGUGAAUGAUGCGGGAGGUAAAUUUCAUCCUUUUCUUGUCUGUGCUUGGACUGAAGGGAGCUCCCUUCUACUGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA139082.1	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   **||||||||||||||||||| targets:770   UAGGAGCUCCCUUCAGUCCAA   790 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139083.1	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   **||||||||||||||||||| targets:2080   UAGGAGCUCCCUUCAGUCCAA   2100 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139084.1	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   **||||||||||||||||||| targets:2927   UAGGAGCUCCCUUCAGUCCAA   2947 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).