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BaseInfo

ncRNA ID	vvi-miR390
Species	Vitis vinifera
Class	miRNA
Genome position	chr6:8159519-8159658 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AAGCUCAGGAGGGAUAGCGCC - 31
Stem-loop(if miRNA)	--         U          G             --A  --C       AAA   UUGU      -    A   AGAAUCUGU AAGCUCAGGA GGAUAGCGCCAUG   GC   AUGAUGA   UGA    UGAGUU GAAA U   ||||||||| |||||||||| |||||||||||||   ||   |||||||   |||    |||||| ||||   UCUUGGGCA UUUGAGUCCU UCUAUCGCGGUGU   UG   UACUACU   GUU    GUUCGA CUUU U CU         C          A             GUG  UUU       -GG   UUUU      U    U
Stem-loop sequence	AGAAUCUGUUAAGCUCAGGAGGGAUAGCGCCAUGAGCCAUGAUGAAAAUGAUUGUUGAGUUGAAAAUUUUUUCUAGCUUGUUUUUUGGGUCAUCAUUUUGUGUGUGUGGCGCUAUCUAUCCUGAGUUUCACGGGUUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA165260.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||||||||||||||||||| targets:440   GGCGCUAUCCCUCCUGAGCUU   460 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_41030_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139911.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ||||*||||=||||||||||| targets:188   GGCGAUAUCUCUCCUGAGCUU   208 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_25595_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002271352.3	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   |||*||||*|||||||||||| targets:2333   GGCUCUAUACCUCCUGAGCUU   2353 Target Full Sequence	2.5	PREDICTED: Vitis vinifera leucine-rich repeat receptor-like protein kinase PEPR1 (LOC100245296), mRNA	NA	coding protein	psRNATarget
FQ386573.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   ****||||||||||||||||* targets:484   UUGUCUAUCCCUCCUGAGCUA   504 Target Full Sequence	3.0	Vitis vinifera clone SS0AEB29YH09	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).