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BaseInfo

ncRNA ID	vvi-miR3631b-3p
Species	Vitis vinifera
Class	miRNA
Genome position	chr5:6430141-6430304 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	103 - UGUUGGAUGAUGUCAAUAAGU - 123
Stem-loop(if miRNA)	-A      C    C  C          A                    A     C     CUA   A GUGGUGUUUGUUUUUU  UUUUUU UAUU AG UAAAAGUAAC UGUUGACAUCAUCCAAUAUA CUAAA UGAAC   UUG U ||||||||||||||||  |||||| |||| || |||||||||| |||||||||||||||||||| ||||| |||||   ||| CACCACAAACAAAAAA  GAAAAA AUAA UC AUUUUCAUUG AUAACUGUAGUAGGUUGUAU GAUUU ACUUG   AAC A                 CC      A    A  A          A                    C     U     ---   A
Stem-loop sequence	GUGGUGUUUGUUUUUUAUUUUUUCUAUUCAGCUAAAAGUAACAUGUUGACAUCAUCCAAUAUAACUAAACUGAACCUAUUGAUAACAAGUUCAUUUUAGCUAUGUUGGAUGAUGUCAAUAAGUUACUUUUAACUAAAUAAAAAAAGCCAAAAAACAAACACCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA161886.1	ncRNA:21   UGAAUAACUGUAGUAGGUUGU   1   ||||||||||||||||||||= targets:216   ACUUAUUGACAUCAUCCAACG   236 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139149.1	ncRNA:21   UGAAUAACUGUAGUAGGUUGU   1   |||*||||||||||*|||||| targets:1979   ACUCAUUGACAUCAACCAACA   1999 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1202_Transcript_8/9_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA158831.1	ncRNA:21   UGAAUAACUGUAGUAGGUUGU   1   *=|||*||*|||||||||||| targets:54   CUUUAAUGCCAUCAUCCAACA   74 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_17030_Transcript_8/10_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142775.1	ncRNA:21   UGAAUAACUGUAGUAGGUUGU   1   ||*|=||*||||||||||||| targets:1295   ACGUGUUAACAUCAUCCAACA   1315 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142774.1	ncRNA:21   UGAAUAACUGUAGUAGGUUGU   1   ||*|=||*||||||||||||| targets:1395   ACGUGUUAACAUCAUCCAACA   1415 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).