| ncRNA ID | vvi-miR403e |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr5:168099-168213 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 85 - UUAGAUUCACGCACAAACUCG - 105 |
| Stem-loop(if miRNA) |
-- C U A A CC A U GC AUAUCUU UA GCA AUC C AGUUUGUGCGUGAAUC AAC C UCG A CGUCC CGUG C ||| ||| | |||||||||||||||| ||| | ||| | ||||| |||| U UGU UAG G UCAAACACGCACUUAG UUG G AGC U GCGGG GCAC A CC C C C A CC C - UA ------- UA |
| Stem-loop sequence | GCACAUCUCAAGUUUGUGCGUGAAUCAAACCCCAUCGUAGCCGUCCAUAUCUUCGUGUACUAAUCACGGGGCGAUUCGACGCCGUUAGAUUCACGCACAAACUCGCGAUCUGUCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_002274113.3 |
|
0.0 | PREDICTED: Vitis vinifera protein argonaute 2 (LOC100251084), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019222724.1 |
|
0.0 | PREDICTED: Vitis vinifera protein argonaute 2 (LOC100249360), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_003633012.3 |
|
0.0 | PREDICTED: Vitis vinifera protein argonaute 2 (LOC100249360), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019222723.1 |
|
0.0 | PREDICTED: Vitis vinifera protein argonaute 2 (LOC100249360), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010657626.2 |
|
0.0 | PREDICTED: Vitis vinifera protein argonaute 2 (LOC100240850), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA137057.1 |
|
0.0 | TSA: Vitis vinifera Locus_7939_Transcript_8/10_Confidence_0.508.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA137059.1 |
|
3.0 | TSA: Vitis vinifera Locus_4653_Transcript_5/5_Confidence_0.583.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |