| ncRNA ID | vvi-miR845d |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr4:9870404-9870534 [-] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - UGGCUCUGAUACCAAUUGAUG - 31 |
| Stem-loop(if miRNA) |
----AUAA AA AUCCC AUAAACAAAAACUC -AA AG CA CC CAUUAAUU UAGGGCCAUGGG UGC AACCA UUAG C || |||||||| |||||||||||| ||| ||||| |||| GG GUAGUUAA GUCUCGGUAUCC ACG UUGGU GAUC A UCCAAAAA -- CCAUA ----AAUCAUUAAC AUC AA CC |
| Stem-loop sequence | AUAACCAACAUUAAUUAUCCCUAGGGCCAUGGGAUAAACAAAAACUCUGCAAAACCAAGUUAGCACACCCUAGAAUGGUUCUAGCACAAUUACUAACCUAUGGCUCUGAUACCAAUUGAUGGGAAAAACCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA173273.1 |
|
2.0 | TSA: Vitis vinifera Locus_10204_Transcript_5/9_Confidence_0.152.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_019225147.1 |
|
3.0 | PREDICTED: Vitis vinifera probable leucine-rich repeat receptor-like protein kinase At1g35710 (LOC100262962), mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |