Search result

BaseInfo

ncRNA ID	vvi-miR168
Species	Vitis vinifera
Class	miRNA
Genome position	chr2:17944801-17944932 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	102 - UCGCUUGGUGCAGGUCGGGAA - 122
Stem-loop(if miRNA)	--G     UA     C          U     A C  C     CG       AGCGCCGGAGGCAC    GUCUC  AUUCG UUGGUGCAGG CGGGA C GA UUCGC  CUCCGGC              G    |||||  ||||| |||||||||| ||||| | || |||||  |||||||              C    CAGAG  UAAGU AACUACGUUC GCCCU G CU AAGCG  GUCGUUG              G CGG     GC     C          C     A C  U     -A       GUUAGCAUCCGGCG
Stem-loop sequence	GGUCUCUAAUUCGCUUGGUGCAGGUCGGGAACCGACUUCGCCGCUCCGGCAGCGCCGGAGGCACGCGGCGGCCUACGAUUGGUUGCUGAGCGAAUUCCGAUCCCGCCUUGCAUCAACUGAAUCGGAGACGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA157509.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   ||||||||||||||||||||| targets:2436   UUCCCGACCUGCACCAAGCGA   2456 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_5831_Transcript_2/4_Confidence_0.556.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA156785.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   ||||||||||||||||||||| targets:398   UUCCCGACCUGCACCAAGCGA   418 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_5831_Transcript_4/4_Confidence_0.222.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).