| ncRNA ID | vvi-miR845b |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr2:12264843-12265284 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 412 - UAGCUCUGAUACCAAUUGAUA - 432 |
| Stem-loop(if miRNA) |
UUUCA -----G -CCU U -- AA AAUCUCCAAAUUUCCUUAGCAGA -AU C UCUAUUAUAUUCAUUCCUAUCCAUAGCACAUUGCAAAGUAAAAACGACUUUAGCAUUUAAUUGAAAAUUUCUUCUAUCAAGCUCAUUCCAUUCUUGCUUGAGUUUUGGAACCAAAACUCCAUCAACUAAUUUAGUGGGAAAAGUUGGGCCAU CUU AUUAGUU UCA GAGUU AUUUC GC UUUAC UGG AUAU C ||| ||||||| ||| ||||| ||||| || ||||| ||| |||| U GAA UAGUUAA AGU CUCGA UGGAG CG CUGAA GUA GAUU U ---CG ACAAAA CCAU - UC AA -------------------AAUU UUA - CUCCUUUUACCAACAAGGUAGUUCGAGUAGAGUUUGACUUUUAACAAGUUUUGUAUCUCGAGGUAAGAAAUGCCCUUGGCUGAUAGGGAUAACCUUUCAAUCUUACUGAACCAUGAAUGUUAGUUGACUAAAUCUACAUACCCUACAGUAAC |
| Stem-loop sequence | UUUCACUUGAUUAGUUCCUUCAUGAGUUAUUUCAAGCAAUCUCCAAAUUUCCUUAGCAGAUUUACAUUGGCAUAUUCUAUUAUAUUCAUUCCUAUCCAUAGCACAUUGCAAAGUAAAAACGACUUUAGCAUUUAAUUGAAAAUUUCUUCUAUCAAGCUCAUUCCAUUCUUGCUUGAGUUUUGGAACCAAAACUCCAUCAACUAAUUUAGUGGGAAAAGUUGGGCCAUCUUCAAUGACAUCCCAUACAUCUAAAUCAGUUGAUUGUAAGUACCAAGUCAUUCUAACUUUCCAAUAGGGAUAGUCGGUUCCCGUAAAGAAUGGAGCUCUAUGUUUUGAACAAUUUUCAGUUUGAGAUGAGCUUGAUGGAACAACCAUUUUCCUCUUAGAUGAUUAAGUCUUAAGCAAGAGGUCUAGCUCUGAUACCAAUUGAUAAAACAAAGGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA162649.1 |
|
2.0 | TSA: Vitis vinifera Locus_28285_Transcript_5/7_Confidence_0.474.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010653322.2 |
|
2.0 | PREDICTED: Vitis vinifera uncharacterized LOC104879667 (LOC104879667), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019225115.1 |
|
2.0 | PREDICTED: Vitis vinifera nuclear pore complex protein NUP98A-like (LOC104881375), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019225114.1 |
|
2.0 | PREDICTED: Vitis vinifera nuclear pore complex protein NUP98A-like (LOC104881375), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019217151.1 |
|
2.0 | PREDICTED: Vitis vinifera uncharacterized LOC109121825 (LOC109121825), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019217149.1 |
|
2.0 | PREDICTED: Vitis vinifera uncharacterized LOC109121825 (LOC109121825), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019217150.1 |
|
2.0 | PREDICTED: Vitis vinifera uncharacterized LOC109121825 (LOC109121825), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010658145.2 |
|
2.0 | PREDICTED: Vitis vinifera uncharacterized LOC104880663 (LOC104880663), mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |