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BaseInfo

ncRNA ID vvi-miR477b-5p
Species Vitis vinifera
Class miRNA
Genome position chr2:1237689-1237805 [+]
Reference genome Genoscope-20100122
Source miRBase
Length 22
Mature sequence(if miRNA) 27 - ACUCUUUCUCAAGGGCUUCUAG - 48
Stem-loop(if miRNA) GCCAACA       UUUCUA   CU      UU U          U   A      GUA
       CGAGGCA      UUG  CACUCU  C CAAGGGCUUC AGC UUGCCA   A
       |||||||      |||  ||||||  | |||||||||| ||| ||||||   C
       GCUCUGU      AAC  GUGAGA  G GUUUCUGAAG UCG AACGGU   A
CGUAUAA       --UGCA   AG      GG -          C   -      AAA
Stem-loop sequence GCCAACACGAGGCAUUUCUAUUGCUCACUCUUUCUCAAGGGCUUCUAGCAUUGCCAGUAACAAAAUGGCAAGCUCGAAGUCUUUGGGGAGAGUGGACAAACGUUGUCUCGAAUAUGC

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).