Search result

BaseInfo

ncRNA ID	vvi-miR319c
Species	Vitis vinifera
Class	miRNA
Genome position	chr2:855561-855742 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	12 - UUGGACUGAAGGGAGCUCCCU - 32
Stem-loop(if miRNA)	--UUA  U     A     UU          CU      UG  AG       G    A -  G   AC       UC  AA     U  UAA      CA UGAAG GAGCU  CUUCAGUCCA  CAUGGG  GC  UAGGAUU AAUU G CU CCG  UCAUUCA  CA  UACUG GU   G      || ||||| |||||  ||||||||||  ||||||  ||  ||||||| |||| | || |||  |||||||  ||  ||||| ||      GU ACUUC CUCGA  GAAGUCAGGU  GUGUCC  CG  AUUCUAG UUAA C GA GGC  AGUAAGU  GU  AUGAC CA   G CUAAC  C     C     GG          UC      CU  -A       G    A A  G   GU       UA  AA     C  UCA
Stem-loop sequence	UUACAUUGAAGAGAGCUUUCUUCAGUCCACUCAUGGGUGGCAGUAGGAUUGAAUUAGCUGCCGACUCAUUCAUCCAAAUACUGUGUUAAGGACUACCCAGUAAAUGAUUGAAUGAUGCGGGAGACAAAUUGGAUCUUAAGCUCCCUGUGCUUGGACUGAAGGGAGCUCCCUUCACUGCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA139082.1	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   **||||||||||||||||||| targets:770   UAGGAGCUCCCUUCAGUCCAA   790 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139083.1	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   **||||||||||||||||||| targets:2080   UAGGAGCUCCCUUCAGUCCAA   2100 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139084.1	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   **||||||||||||||||||| targets:2927   UAGGAGCUCCCUUCAGUCCAA   2947 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).