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BaseInfo

ncRNA ID	vvi-miR3635-3p
Species	Vitis vinifera
Class	miRNA
Genome position	chr18:27357633-27357764 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	103 - AUUAUGUCCCACACAUGCCUC - 123
Stem-loop(if miRNA)	A                       G            G   -  C     AGUGUG AAUAACAAG AGGCAUGUGUGGGGCAUAAUAGA AAUGCAAAGAAA GGU UG UAUUG      A ||||||||| ||||||||||||||||||||||| |||||||||||| ||| || |||||      U UUAUUGUUC UCCGUACACACCCUGUAUUAUCU UUACGUUUUUUU CCA AC GUAAC      A          C                       G            A   U  A     AGGGUU
Stem-loop sequence	AAUAACAAGAAGGCAUGUGUGGGGCAUAAUAGAGAAUGCAAAGAAAGGGUUGCUAUUGAGUGUGAUAUUGGGACAAUGACAUACCAUUUUUUUGCAUUGUCUAUUAUGUCCCACACAUGCCUCCUUGUUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019226520.1	ncRNA:21   CUCCGUACACACCCUGUAUUA   1   ||||||||||||||||||||| targets:1978   GAGGCAUGUGUGGGACAUAAU   1998 Target Full Sequence	0.0	PREDICTED: Vitis vinifera ABC transporter A family member 2 (LOC100258795), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_019226519.1	ncRNA:21   CUCCGUACACACCCUGUAUUA   1   ||||||||||||||||||||| targets:2346   GAGGCAUGUGUGGGACAUAAU   2366 Target Full Sequence	0.0	PREDICTED: Vitis vinifera ABC transporter A family member 2 (LOC100258795), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010665087.2	ncRNA:21   CUCCGUACACACCCUGUAUUA   1   ||||||||||||||||||||| targets:2165   GAGGCAUGUGUGGGACAUAAU   2185 Target Full Sequence	0.0	PREDICTED: Vitis vinifera ABC transporter A family member 2 (LOC100258795), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_002274066.3	ncRNA:21   CUCCGUACACACCCUGUAUUA   1   ||||||||||||||||||||| targets:2261   GAGGCAUGUGUGGGACAUAAU   2281 Target Full Sequence	0.0	PREDICTED: Vitis vinifera ABC transporter A family member 2 (LOC100258795), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010665086.2	ncRNA:21   CUCCGUACACACCCUGUAUUA   1   ||||||||||||||||||||| targets:2340   GAGGCAUGUGUGGGACAUAAU   2360 Target Full Sequence	0.0	PREDICTED: Vitis vinifera ABC transporter A family member 2 (LOC100258795), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).