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BaseInfo

ncRNA ID	vvi-miR3635-5p
Species	Vitis vinifera
Class	miRNA
Genome position	chr18:27357633-27357764 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	12 - GGCAUGUGUGGGGCAUAAUAG - 32
Stem-loop(if miRNA)	A                       G            G   -  C     AGUGUG AAUAACAAG AGGCAUGUGUGGGGCAUAAUAGA AAUGCAAAGAAA GGU UG UAUUG      A ||||||||| ||||||||||||||||||||||| |||||||||||| ||| || |||||      U UUAUUGUUC UCCGUACACACCCUGUAUUAUCU UUACGUUUUUUU CCA AC GUAAC      A          C                       G            A   U  A     AGGGUU
Stem-loop sequence	AAUAACAAGAAGGCAUGUGUGGGGCAUAAUAGAGAAUGCAAAGAAAGGGUUGCUAUUGAGUGUGAUAUUGGGACAAUGACAUACCAUUUUUUUGCAUUGUCUAUUAUGUCCCACACAUGCCUCCUUGUUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA150740.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   ||||||||=|||||||||||| targets:946   CUAUUAUGUCCCACACAUGCC   966 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1272_Transcript_5/11_Confidence_0.286.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA150742.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   ||||||||=|||||||||||| targets:946   CUAUUAUGUCCCACACAUGCC   966 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1272_Transcript_7/11_Confidence_0.571.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA150741.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   ||||||||=|||||||||||| targets:946   CUAUUAUGUCCCACACAUGCC   966 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1272_Transcript_6/11_Confidence_0.571.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA150743.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   ||||||||=|||||||||||| targets:946   CUAUUAUGUCCCACACAUGCC   966 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1272_Transcript_9/11_Confidence_0.571.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ395209.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   |*=*||||||||||||||||| targets:1053   CCGCUAUGCCCCACACAUGCC   1073 Target Full Sequence	2.0	Vitis vinifera clone SS0AFA17YC14	NA	coding protein	psRNATarget
XM_019217104.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   |*=*||||||||||||||||| targets:1720   CCGCUAUGCCCCACACAUGCC   1740 Target Full Sequence	2.0	PREDICTED: Vitis vinifera ABC transporter C family member 3 (LOC100252075), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019217105.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   |*=*||||||||||||||||| targets:1721   CCGCUAUGCCCCACACAUGCC   1741 Target Full Sequence	2.0	PREDICTED: Vitis vinifera ABC transporter C family member 3 (LOC100252075), transcript variant X5, mRNA	NA	coding protein	psRNATarget
KA155674.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   |*=*||||||||||||||||| targets:2300   CCGCUAUGCCCCACACAUGCC   2320 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_2771_Transcript_18/19_Confidence_0.282.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA155673.1	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   |*=*||||||||||||||||| targets:1651   CCGCUAUGCCCCACACAUGCC   1671 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_2771_Transcript_13/19_Confidence_0.320.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_003634705.3	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   |*=*||||||||||||||||| targets:2772   CCGCUAUGCCCCACACAUGCC   2792 Target Full Sequence	2.0	PREDICTED: Vitis vinifera ABC transporter C family member 3 (LOC100252075), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_003634707.3	ncRNA:21   GAUAAUACGGGGUGUGUACGG   1   |*=*||||||||||||||||| targets:3889   CCGCUAUGCCCCACACAUGCC   3909 Target Full Sequence	2.0	PREDICTED: Vitis vinifera ABC transporter C family member 3 (LOC100254999), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).