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BaseInfo

ncRNA ID vvi-miR3623-5p
Species Vitis vinifera
Class miRNA
Genome position chr18:24650012-24650140 [+]
Reference genome Genoscope-20100122
Source miRBase
Length 22
Mature sequence(if miRNA) 18 - UCACAAGUUCAUCCAAGCACCA - 39
Stem-loop(if miRNA)         U    A    CA       A             UAAAGCUCAAAC      AC      C
AAGAAUUU GAUG UCUU  CAAGUUC UCCAAGCACCAUC            AGGCCU  GGUUUU U
|||||||| |||| ||||  ||||||| |||||||||||||            ||||||  ||||||
UUCUUGAA UUAC AGAA  GUUUAAG AGGUUCGUGGUAG            UUCGGA  UCAAAA U
        -    A    UC       C             ------UACUUA      --      C
Stem-loop sequence AAGAAUUUUGAUGAUCUUCACAAGUUCAUCCAAGCACCAUCUAAAGCUCAAACAGGCCUACGGUUUUCUUCAAAACUAGGCUUAUUCAUGAUGGUGCUUGGACGAAUUUGCUAAGAACAUUAAGUUCUU

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).