ncRNA ID | vvi-miR3623-5p |
Species | Vitis vinifera |
Class | miRNA |
Genome position | chr18:24650012-24650140 [+] |
Reference genome | Genoscope-20100122 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 18 - UCACAAGUUCAUCCAAGCACCA - 39 |
Stem-loop(if miRNA) |
        U    A    CA       A             UAAAGCUCAAAC      AC      C AAGAAUUU GAUG UCUU  CAAGUUC UCCAAGCACCAUC            AGGCCU  GGUUUU U |||||||| |||| ||||  ||||||| |||||||||||||            ||||||  |||||| UUCUUGAA UUAC AGAA  GUUUAAG AGGUUCGUGGUAG            UUCGGA  UCAAAA U         -    A    UC       C             ------UACUUA      --      C |
Stem-loop sequence | AAGAAUUUUGAUGAUCUUCACAAGUUCAUCCAAGCACCAUCUAAAGCUCAAACAGGCCUACGGUUUUCUUCAAAACUAGGCUUAUUCAUGAUGGUGCUUGGACGAAUUUGCUAAGAACAUUAAGUUCUU |
1 | PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010). |