ncRNA ID | vvi-miR3638-3p |
Species | Vitis vinifera |
Class | miRNA |
Genome position | chr17:7119929-7120133 [-] |
Reference genome | Genoscope-20100122 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 63 - GCAACAAGCAUGAAAAGGCACACC - 86 |
Stem-loop(if miRNA) |
          A            C         -                   G                      C                   AUAUAU AUAUAAUGAU AAUAAUAAACUG UGUAACUAC UUUAUUUUUUGUUUGCCUU GGUGCUUUGGUGUGCCUUUUCG GCUUGUUGCUAAUAUAUAU      A |||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| UAUAUUACUA UUAUUAUUUGAC ACAUUGAUG AAAUAAAAAACAAACGGGA CCACGAAACCACACGGAAAAGU CGAACAACGAUUAUAUAUA      G           C            A         G                   G                      A                   AAAACG |
Stem-loop sequence | AUAUAAUGAUAAAUAAUAAACUGCUGUAACUACUUUAUUUUUUGUUUGCCUUGGGUGCUUUGGUGUGCCUUUUCGCGCUUGUUGCUAAUAUAUAUAUAUAUAGGCAAAAAUAUAUAUUAGCAACAAGCAUGAAAAGGCACACCAAAGCACCGAGGGCAAACAAAAAAUAAAGGUAGUUACAACAGUUUAUUAUUCAUCAUUAUAU |
1 | PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010). |