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BaseInfo

ncRNA ID	vvi-miR3630-3p
Species	Vitis vinifera
Class	miRNA
Genome position	chr17:6897444-6897545 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	22
Mature sequence(if miRNA)	71 - UUUGGGAAUCUCUCUGAUGCAC - 92
Stem-loop(if miRNA)	G       --  U  C   A  AGA        --   G  -C     CAGUAUG UUGUGCA  AG GA GAU UC   CAGGGACA  UCA CA  CUCCA ||||||| |||||||  || || ||| ||   ||||||||  ||| ||  ||||A GUUAUAC AACACGU  UC CU CUA AG   GUUUCUGU  AGU GU  GAGGU        G       AG  U  -   -  --G        UU   A  AA
Stem-loop sequence	CAGUAUGGUUGUGCAAGUGACGAUAUCAGACAGGGACAUCAGCACCUCCAAUGGAGAAUGAUGAUUUGUCUUUGGGAAUCUCUCUGAUGCACAAGCAUAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA149912.1	ncRNA:22   CACGUAGUCUCUCUAAGGGUUU   1   |||||||||||||||||||||| targets:2792   GUGCAUCAGAGAGAUUCCCAAA   2813 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_1264_Transcript_2/5_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA149913.1	ncRNA:22   CACGUAGUCUCUCUAAGGGUUU   1   |||||||||||||||||||||| targets:2792   GUGCAUCAGAGAGAUUCCCAAA   2813 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_1264_Transcript_4/5_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA149913.1	ncRNA:22   CACGUAGUCUCUCUAAGGGUUU   1   *||||||||||||||||||||= targets:3055   AUGCAUCAGAGAGAUUCCCAAG   3076 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_1264_Transcript_4/5_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010654163.2	ncRNA:22   CACGUAGUCUCUCUAAGGGUUU   1   ***||*|=|||||||||||||| targets:1684   AAUCACCGGAGAGAUUCCCAAA   1705 Target Full Sequence	2.0	PREDICTED: Vitis vinifera LRR receptor-like serine/threonine-protein kinase RCH1 (LOC100854320), mRNA	NA	coding protein	psRNATarget
KA159805.1	ncRNA:22   CACGUAGU-CUCUCUAAGGGUUU   1   **||||*|-|||||||||||||| targets:1403   UGGCAUAAAGAGAGAUUCCCAAA   1425 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_1012_Transcript_3/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159803.1	ncRNA:22   CACGUAGU-CUCUCUAAGGGUUU   1   **||||*|-|||||||||||||| targets:1023   UGGCAUAAAGAGAGAUUCCCAAA   1045 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_1012_Transcript_1/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159804.1	ncRNA:22   CACGUAGU-CUCUCUAAGGGUUU   1   **||||*|-|||||||||||||| targets:1403   UGGCAUAAAGAGAGAUUCCCAAA   1425 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_1012_Transcript_4/6_Confidence_0.438.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159806.1	ncRNA:22   CACGUAGU-CUCUCUAAGGGUUU   1   **||||*|-|||||||||||||| targets:1403   UGGCAUAAAGAGAGAUUCCCAAA   1425 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_1012_Transcript_5/6_Confidence_0.625.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).