| ncRNA ID | vvi-miR395n |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr17:6408995-6409131 [-] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - CUGAAGAGUCUGGAGGAACUC - 31 |
| Stem-loop(if miRNA) |
-- C UG C AC C C UGACCAUCUCUCUUCUUCUUUUA GUUCAUCAAAUCUUCUUCU GGC U AGAGUUCC CCA C CU CAGUA AUUU A ||| | |||||||| ||| | || ||||| |||| C CCG G UCUCAAGG GGU G GA GUCAU UCCU U CA U GU A CU A A ----------------------C UUAGUGGGACCUUUAUCUA |
| Stem-loop sequence | GGCCUUGAGAGUUCCCCCAACCCCUCCAGUAUGACCAUCUCUCUUCUUCUUUUAAUUUGUUCAUCAAAUCUUCUUCUACUAUCUAUUUCCAGGGUGAUUUCCUCUACUGAAGAGUCUGGAGGAACUCUUGGUGCCAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA161862.1 |
|
2.5 | TSA: Vitis vinifera Locus_5658_Transcript_2/6_Confidence_0.722.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA161861.1 |
|
2.5 | TSA: Vitis vinifera Locus_5658_Transcript_1/6_Confidence_0.722.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002283536.4 |
|
2.5 | PREDICTED: Vitis vinifera ATP sulfurylase 1, chloroplastic-like (LOC100259752), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA159041.1 |
|
3.0 | TSA: Vitis vinifera Locus_6426_Transcript_2/10_Confidence_0.407.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |