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BaseInfo

ncRNA ID vvi-miR3633a-5p
Species Vitis vinifera
Class miRNA
Genome position chr17:5521907-5522061 [+]
Reference genome Genoscope-20100122
Source miRBase
Length 20
Mature sequence(if miRNA) 32 - GGAAUGGAUGGUUAGGAGAG - 51
Stem-loop(if miRNA)     U      UGAAU           AA    -     A    -      AG    CCUCUUAUA       U       UC
GAAA GGGAGA     AUUUCGAAAGC  UAGG AAUGG UGGU UAGGAG  AACU         UAUUUCU CAUCUUC  C
|||| ||||||     |||||||||||  |||| ||||| |||| ||||||  ||||         ||||||| |||||||
CUUU CCCUCU     UAAAGCUUUUG  AUCC UUACC ACCA AUCCUU  UUGA         GUGAAGG GUAGAGG  G
    U      ---UU           GC    C     C    U      GG    --------C       U       CC
Stem-loop sequence GAAAUGGGAGAUGAAUAUUUCGAAAGCAAUAGGAAUGGAUGGUUAGGAGAGAACUCCUCUUAUAUAUUUCUUCAUCUUCUCCGCCGGAGAUGUGGAAGUGCAGUUGGUUCCUAUACCACCCAUUCCCUACGGUUUUCGAAAUUUUCUCCCUUUUC

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).