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BaseInfo

ncRNA ID vvi-miR3633b-3p
Species Vitis vinifera
Class miRNA
Genome position chr17:5521567-5521678 [+]
Reference genome Genoscope-20100122
Source miRBase
Length 22
Mature sequence(if miRNA) 79 - GUUCCCAUGCCAUCCAUUCCUA - 100
Stem-loop(if miRNA)       AG  CC               -     U     ---    --CUU      A
UCCCGG  GC  AUGGGAAUGGGUGGC UGGGA CUAAU   GUUU     CACAUC U
||||||  ||  ||||||||||||||| ||||| |||||   ||||     |||||| G
AGGGCC  UG  UAUCCUUACCUACCG ACCCU GGUUG   CGAA     GUGUAG U
      CU  -C               U     U     AGU    AAACU      A
Stem-loop sequence UCCCGGAGGCCCAUGGGAAUGGGUGGCUGGGAUCUAAUGUUUCUUCACAUCAUGUAGAUGUGUCAAAAAGCUGAGUUGGUUCCCAUGCCAUCCAUUCCUAUCGUUCCCGGGA

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).