| ncRNA ID | vvi-miR162 |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr17:4716519-4716621 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 73 - UCGAUAAACCUCUGCAUCCAG - 93 |
| Stem-loop(if miRNA) |
---- GU A C C UC C AA GUG UGAA C CUGGAUGCAG GGUU AUCGAUC UUC UGA UUGUU A |||| | |||||||||| |||| ||||||| ||| ||| ||||| ACUU G GACCUACGUC CCAA UAGCUGG AAG ACU GACGA A CCUC -- C U A CU A -A AAA |
| Stem-loop sequence | UGAAGUCACUGGAUGCAGCGGUUCAUCGAUCUCUUCCUGAAAUUGUUGUGAAAAAAGCAGAUCAAGAAUCGGUCGAUAAACCUCUGCAUCCAGCGUUCACUCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_010666807.2 |
|
1.5 | PREDICTED: Vitis vinifera probable magnesium transporter NIPA4 (LOC100250391), transcript variant X4, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010666806.2 |
|
1.5 | PREDICTED: Vitis vinifera probable magnesium transporter NIPA4 (LOC100250391), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010666805.2 |
|
1.5 | PREDICTED: Vitis vinifera probable magnesium transporter NIPA4 (LOC100250391), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010666804.2 |
|
1.5 | PREDICTED: Vitis vinifera probable magnesium transporter NIPA4 (LOC100250391), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA153855.1 |
|
1.5 | TSA: Vitis vinifera Locus_4812_Transcript_11/12_Confidence_0.436.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010663220.2 |
|
3.0 | PREDICTED: Vitis vinifera endoribonuclease Dicer homolog 1 (LOC100264308), mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |