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BaseInfo

ncRNA ID	vvi-miR319g
Species	Vitis vinifera
Class	miRNA
Genome position	chr17:3675978-3676199 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUGGACUGAAGGGAGCUCCCA - 31
Stem-loop(if miRNA)	-GAACA   -GAA                   AA  A    U   G -    -CC  -A   G    C       CUU     U     ------U  U    U  AU  -            GCU    GAGCUCCUUUUAGUCCAAU  AG GGGC GAG G GCGG   AG  GCU CCAU UCAUGCA   GGCUA GCUUA       UC UUUC CA  CA AUUCGG       |||    |||||||||||||||||||  || |||| ||| | ||||   ||  ||| |||| |||||||   ||||| |||||       || |||| ||  || |||||U       CGG    CUCGAGGGAAGUCAGGUUA  UC CCCG UUC C CGCC   UC  CGA GGUA AGUACGU   CCGAU UGAAU       AG GAGG GU  GU UGAGCU UCUAGA   GACC                   -C  A    U   G A    UCC  AA   G    C       AGU     U     CGUAAAC  U    U  CG  A
Stem-loop sequence	GAACAGCUGAAGAGCUCCUUUUAGUCCAAUAAAGAGGGCUGAGGGGCGGCCAGAGCUGCCAUCUCAUGCACUUGGCUAUGCUUAUUCUUUUCUCAAUCAAUUCGGUUCGAGUAUGGCUGUGGAGUGACAAAUGCUAAGUUUAGCCUGAUGCAUGACAUGGGAGCAACUCCUCCGCACGCUUUGCCCACUCAUUGGACUGAAGGGAGCUCCCAGGGCAGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA139082.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*||||||||||||||||||| targets:770   UAGGAGCUCCCUUCAGUCCAA   790 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139083.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*||||||||||||||||||| targets:2080   UAGGAGCUCCCUUCAGUCCAA   2100 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139084.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*||||||||||||||||||| targets:2927   UAGGAGCUCCCUUCAGUCCAA   2947 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KX639825.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:956   UUGGAGCUCCCUUCACUCCAA   976 Target Full Sequence	1.5	UNVERIFIED: Vitis vinifera GAMYB-like mRNA, complete sequence	NA	coding protein	psRNATarget
XM_019217706.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1075   UUGGAGCUCCCUUCACUCCAA   1095 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_019217705.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1429   UUGGAGCUCCCUUCACUCCAA   1449 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_019217704.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1436   UUGGAGCUCCCUUCACUCCAA   1456 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X5, mRNA	NA	coding protein	psRNATarget
KA143670.1	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1422   UUGGAGCUCCCUUCACUCCAA   1442 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3605_Transcript_9/9_Confidence_0.444.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010647229.2	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1481   UUGGAGCUCCCUUCACUCCAA   1501 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010647226.2	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1488   UUGGAGCUCCCUUCACUCCAA   1508 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_002275810.4	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1748   UUGGAGCUCCCUUCACUCCAA   1768 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010647228.2	ncRNA:21   ACCCUCGAGGGAAGUCAGGUU   1   |*|||||||||||||*||||| targets:1817   UUGGAGCUCCCUUCACUCCAA   1837 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X2, mRNA	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).