| ncRNA ID | ath-miR829-3p.2 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:11834022-11834226 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 52 - CAAAUUAAAGCUUCAAGGUAG - 72 |
| Stem-loop(if miRNA) |
ACG AAA GAUUAACAAAAAGUCAAUGAAUCAUUCUACCAAUUGACUUGUACUUUGAAGCUUUGAUUUGAACCUGUCAAUUGGUAUCAAAGCUUCUAAAUC UC AUU U || ||| AG UUC U --U --- UACCAUUUGAGCUUCACGAAAAAGAAAAGAGACGGUUCUACUGAUGAUGGAACUUCGAAAUUAAACUAAGGUAGUAAACCAUAGUCUCGAAGU |
| Stem-loop sequence | ACGUCAAAAUUGAUUAACAAAAAGUCAAUGAAUCAUUCUACCAAUUGACUUGUACUUUGAAGCUUUGAUUUGAACCUGUCAAUUGGUAUCAAAGCUUCUAAAUCUUUGAAGCUCUGAUACCAAAUGAUGGAAUCAAAUUAAAGCUUCAAGGUAGUAGUCAUCUUGGCAGAGAAAAGAAAAAGCACUUCGAGUUUACCAUCUUGAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001333985.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001333986.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001333987.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001333988.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001333989.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_104836.2 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001333983.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001333984.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001198354.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| NM_001198352.1 |
|
2.0 | Arabidopsis thaliana Seven transmembrane MLO family protein (MLO6), mRNA | Seven transmembrane MLO family protein(MLO6) | coding protein | psRNATarget | |||||||||
| AF369567.2 |
|
2.0 | Arabidopsis thaliana membrane protein Mlo6 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001085029.3 |
|
2.0 | Arabidopsis thaliana ROTUNDIFOLIA like 6 (RTFL6), mRNA | ROTUNDIFOLIA like 6(RTFL6) | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |
| 4 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |