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BaseInfo

ncRNA ID	vvi-miR3625-3p
Species	Vitis vinifera
Class	miRNA
Genome position	chr17:2378186-2378340 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	37 - CGGGAGAUGACUACUGGAAGC - 57
Stem-loop(if miRNA)	A   C     - U      ---U -               C          AA  U      AAAC UG   --  C CAAG AGA UAUAC C UAUACA    C AGUUUUGGCUUCCAG AGUCAUCUCC  GG GGAGCA    U  AUU  GC C |||| ||| ||||| | ||||||    | ||||||||||||||| ||||||||||  || ||||||    |  |||  || GUUU UCU GUAUG G GUGUGU    G UCAAAACCGAAGGUC UCAGUAGAGG  CC CCUCGU    A  UAA  CG U     G   C     U U      UUAU C               A          GC  U      --CU GU   GU  U
Stem-loop sequence	CAAGAAGACUAUACCUUAUACAUCAGUUUUGGCUUCCAGCAGUCAUCUCCAAGGUGGAGCAAAACUUGAUUGCCCUUGCUGAAUUGAUCUGCUCCUCCCGGGAGAUGACUACUGGAAGCCAAAACUCGUAUUUGUGUGUGUGUAUGCUCUGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010658062.2	ncRNA:21   CGAAGGUCAUCAGUAGAGGGC   1   |=|**|||||||||||||||* targets:1238   GUUGGCAGUAGUCAUCUCCCU   1258 Target Full Sequence	3.0	PREDICTED: Vitis vinifera uncharacterized LOC100256125 (LOC100256125), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010658063.2	ncRNA:21   CGAAGGUCAUCAGUAGAGGGC   1   |=|**|||||||||||||||* targets:1392   GUUGGCAGUAGUCAUCUCCCU   1412 Target Full Sequence	3.0	PREDICTED: Vitis vinifera uncharacterized LOC100256125 (LOC100256125), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_002284712.3	ncRNA:21   CGAAGGUCAUCAGUAGAGGGC   1   |=|**|||||||||||||||* targets:1422   GUUGGCAGUAGUCAUCUCCCU   1442 Target Full Sequence	3.0	PREDICTED: Vitis vinifera uncharacterized LOC100256125 (LOC100256125), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).