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BaseInfo

ncRNA ID vvi-miR3625-5p
Species Vitis vinifera
Class miRNA
Genome position chr17:2378186-2378340 [-]
Reference genome Genoscope-20100122
Source miRBase
Length 21
Mature sequence(if miRNA) 102 - UUCCAGCAGUCAUCUCCAAGG - 122
Stem-loop(if miRNA)     A   C     - U      ---U -               C          AA  U      AAAC UG   --  C
CAAG AGA UAUAC C UAUACA    C AGUUUUGGCUUCCAG AGUCAUCUCC  GG GGAGCA    U  AUU  GC C
|||| ||| ||||| | ||||||    | ||||||||||||||| ||||||||||  || ||||||    |  |||  ||
GUUU UCU GUAUG G GUGUGU    G UCAAAACCGAAGGUC UCAGUAGAGG  CC CCUCGU    A  UAA  CG U
    G   C     U U      UUAU C               A          GC  U      --CU GU   GU  U
Stem-loop sequence CAAGAAGACUAUACCUUAUACAUCAGUUUUGGCUUCCAGCAGUCAUCUCCAAGGUGGAGCAAAACUUGAUUGCCCUUGCUGAAUUGAUCUGCUCCUCCCGGGAGAUGACUACUGGAAGCCAAAACUCGUAUUUGUGUGUGUGUAUGCUCUGUUUG

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).