| ncRNA ID | vvi-miR828a |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr16:21724308-21724429 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 10 - UCUUGCUCAAAUGAGUAUUCCA - 31 |
| Stem-loop(if miRNA) |
----UA A U G UC A - --- - AG A U UAA GUU CUU CUCAAAUGAGUAU CAA CAACAG CU UGU GA C AUGAU A ||| ||| ||| ||||||||||||| ||| |||||| || ||| || | ||||| AUU CAA GAA GAGUUUACUCGUA GUU GUUGUU GG ACG CU G UACUG C GUAAAA C C G GA - A UGU U CU A U |
| Stem-loop sequence | UAUAAAGUUUCUUGCUCAAAUGAGUAUUCCAAACAACAGCUUGUGAAGCAAUGAUUACUGUCAUAGUCUCUGCAUGUGGAUUGUUGUUGAGAUGCUCAUUUGAGGAAGCAACCUUAAAAAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_002273955.3 |
|
1.0 | PREDICTED: Vitis vinifera transcription factor MYB114 (LOC100249722), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010648550.2 |
|
1.0 | PREDICTED: Vitis vinifera transcription factor WER-like (LOC104878347), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA160410.1 |
|
2.5 | TSA: Vitis vinifera Locus_64272_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| FQ386639.1 |
|
2.5 | Vitis vinifera clone SS0AEB29YE01 | NA | coding protein | psRNATarget | |||||||||
| XM_002279092.4 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor WER (LOC100244963), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA150926.1 |
|
2.5 | TSA: Vitis vinifera Locus_4802_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002279905.3 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor MYB114 (LOC100250947), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA146364.1 |
|
2.5 | TSA: Vitis vinifera Locus_13741_Transcript_1/2_Confidence_0.750.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010662611.2 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor WER (LOC104881670), mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |